Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5p07
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.4  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   2.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = -3

Query: 568 FHNFGPVQRLYTLRVPDITRIQPFFDMIQHVHRHGI 461
           +  F P   L  L  P   R  P +    H+H H +
Sbjct: 46  YERFSPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQV 81


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 117 CTTATTSPPSRANGS*D 167
           CTTAT + P R +G  D
Sbjct: 8   CTTATLAAPQRPSGGAD 24


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 621 KNDQPPFSKKPSMSSVIVFITLVQFNDCIPSEYRISQEFNHS 496
           KND+    K PS++S+  ++     N  I    ++S   N+S
Sbjct: 219 KNDEGTLRKSPSLTSLNAYLIK---NQTITCPIKVSWRGNYS 257


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 621 KNDQPPFSKKPSMSSVIVFITLVQFNDCIPSEYRISQEFNHS 496
           KND+    K PS++S+  ++     N  I    ++S   N+S
Sbjct: 270 KNDEGTLRKSPSLTSLNAYLIK---NQTITCPIKVSWRGNYS 308


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 621 KNDQPPFSKKPSMSSVIVFITLVQFNDCIPSEYRISQEFNHS 496
           KND+    K PS++S+  ++     N  I    ++S   N+S
Sbjct: 219 KNDEGTLRKSPSLTSLNAYLIK---NQTITCPIKVSWRGNYS 257


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 446 KVAMVNAVPM---DMLDHVKEWLNSCDIRYSEGIQ 541
           KV  VN V M   ++ D VKE+     ++ SEG++
Sbjct: 133 KVCSVNDVNMTITELTDPVKEFWERRALQISEGVE 167


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 621 KNDQPPFSKKPSMSSVIVFITLVQFNDC 538
           KND+    K PS++S+  ++   Q   C
Sbjct: 219 KNDEGTLRKSPSLTSLNAYLIKNQTITC 246


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = -3

Query: 631 FWIQK*PATIFEEALNVICYSFHNFGP 551
           FW+++    +F+   +++C  +  F P
Sbjct: 321 FWLEQYSWALFKAMSHMLCIGYGRFPP 347


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = -3

Query: 631 FWIQK*PATIFEEALNVICYSFHNFGP 551
           FW+++    +F+   +++C  +  F P
Sbjct: 289 FWLEQYSWALFKAMSHMLCIGYGRFPP 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,654
Number of Sequences: 438
Number of extensions: 3797
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)