Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5p06
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 174 9e-45
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 171 6e-44
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 36 0.006
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 28 0.85
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 1.5
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 2.0
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 27 2.6
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 26 3.4
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 4.5
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 26 4.5
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 4.5
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 25 6.0
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 6.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 7.9
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 7.9
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 174 bits (423), Expect = 9e-45
Identities = 89/164 (54%), Positives = 104/164 (63%)
Frame = +2
Query: 56 RLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXS 235
+L +PRP M +C+LGD D AK V M S
Sbjct: 53 KLPNVPRPNMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIAS 112
Query: 236 ESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVD 415
E LIKQIPRLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHVD
Sbjct: 113 EVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVD 172
Query: 416 MTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 547
M ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 173 MAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 171 bits (416), Expect = 6e-44
Identities = 86/164 (52%), Positives = 104/164 (63%)
Frame = +2
Query: 56 RLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXS 235
+L +PRP M +C+LGD D AK V M S
Sbjct: 53 KLPNVPRPNMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIAS 112
Query: 236 ESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVD 415
E LIKQIPRLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHV+
Sbjct: 113 EVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVE 172
Query: 416 MTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 547
M+ ++L N+ L++NFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 173 MSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 35.5 bits (78), Expect = 0.006
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +2
Query: 236 ESLIKQIPRLLGPGLNKAGKFPGLLSHQ----ESMTQKIDEVKGTIKFQMKKVLCLSVAV 403
+ +I +PR+LG + K P + E + +++ G F +
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKC 203
Query: 404 GHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 523
GHV T ELA+NV + F+ ++ + + S+H+K++
Sbjct: 204 GHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 28.3 bits (60), Expect = 0.85
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -2
Query: 429 SSGVMSTWPTATERHSTFFIWNLMVPLTSSIFC 331
S+G ++ T T R + F WN+++ +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +2
Query: 329 TQKIDEVKGTIKFQMKK----VLCLSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKK 484
T++I+ GT+ V LS+A+G+++ P L N H+S+ L L+K
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741
Query: 485 HW 490
H+
Sbjct: 2742 HY 2743
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +1
Query: 370 NEEGAVSFCSSWPCGHDS**ACSECASFHQLPCV 471
NE C W C D C++C ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 415 HDS**ACSECASFHQLPCVTAQETLAEC 498
H S + S ++HQL CV Q+ L+EC
Sbjct: 52 HPSINSLSSFQTYHQLLCVLEQKHLSEC 79
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 489 QCFLSSDTRKLMERCTF*ASSSGVMSTWPTATERHST 379
+CF SD +KL +RC SS WP + +ST
Sbjct: 143 KCFHRSDVQKLSKRCDILFSSE-----WPEDVQENST 174
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 4.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = +3
Query: 384 CVFL*QLAMWT*LLMSLLRMCIFPSTSLCHCSRNTGRMSD 503
C FL ++ + + + +C+F T++ + +N R+++
Sbjct: 37 CTFLLSTILYLGIAVIMSHLCVFDDTAMLYLRQNRSRLAE 76
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 349 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 242
D L RH L + + F + Q GT+ NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 422 PDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY*FNTINFMT 574
P E +N H+ + ++L+ HW+ + SL M++ Q F+ +NFMT
Sbjct: 30 PSEEQRNEHVLKKWENNVLR-HWKILFSLFMQTCGDSVQGNAAFSILNFMT 79
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 442 ILSKLIRSHVHMANCYRKTQHLLHLELNGSLD-FIN-LLRHGLLVGEKTREFTSFVQ 278
+L K++ + ++C+++ +HL+H+ L F N L+ L+ F FVQ
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKPATLIDSALDVFLCFVQ 1103
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 277 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGAV 387
F + W I P+ SLP G H +E PN+EG V
Sbjct: 36 FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 211 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 110
+G+F+ +LF LIQ + + W + + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 233 SESLIKQIPRLLGPGLNKA-GKFPGLLSHQESMTQKIDEVKGTI-KFQMKKVLCLSVAVG 406
S+ ++ R++G K F +++ S +DE++ + K + ++LC VA G
Sbjct: 1733 SQLVLHGFQRVIGDNPVKGVAAFQPVIAALVSYINSLDEIQFSRGKSEFYQLLCAIVACG 1792
Query: 407 HVD 415
H+D
Sbjct: 1793 HID 1795
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 240 H*SSRFPVCWVPV*TKLVNSLVFSPTRS 323
H S RFP PV T L NSL++ T S
Sbjct: 903 HVSGRFPQVSSPVNTALSNSLLYIRTLS 930
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,789
Number of Sequences: 5004
Number of extensions: 49348
Number of successful extensions: 142
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -