Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5p06
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   205   2e-53
AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   205   2e-53
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   189   1e-48
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    38   0.004
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    31   0.44 
AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin...    30   1.0  
AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.      30   1.0  
AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.      30   1.0  
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   7.2  

>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  205 bits (500), Expect = 2e-53
 Identities = 98/164 (59%), Positives = 117/164 (71%)
 Frame = +2

Query: 56  RLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXS 235
           RLK+IPRP M+VCV GDQ H DEA   ++P M                           S
Sbjct: 23  RLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIAS 82

Query: 236 ESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVD 415
           ESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV 
Sbjct: 83  ESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVG 142

Query: 416 MTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 547
           +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 143 LTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186


>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  205 bits (500), Expect = 2e-53
 Identities = 98/164 (59%), Positives = 117/164 (71%)
 Frame = +2

Query: 56  RLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXS 235
           RLK+IPRP M+VCV GDQ H DEA   ++P M                           S
Sbjct: 53  RLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIAS 112

Query: 236 ESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVD 415
           ESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV 
Sbjct: 113 ESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVG 172

Query: 416 MTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 547
           +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 173 LTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  189 bits (461), Expect = 1e-48
 Identities = 91/155 (58%), Positives = 109/155 (70%)
 Frame = +2

Query: 83  MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 262
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 263 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 442
           +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N
Sbjct: 61  ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120

Query: 443 VHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 547
           + LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 121 ISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = +2

Query: 254 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS-VAVGHVDMTPDE 430
           +   LG    +A K P    +Q+ ++  I+    T+ + +++ +  S V VGH+  +  +
Sbjct: 317 VKSFLGKEFYRAHKCPLPFVYQKPISTAIENALRTVVYPLRRYMVRSCVNVGHLGQSSAD 376

Query: 431 LAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 535
           L +N+   +  + S     + N+RS+++ ++ G P
Sbjct: 377 LKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -1

Query: 457 DGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSF 284
           D + + L K+    + + + +R    + HLEL GS  L+FI LL    L  +K R+ T F
Sbjct: 329 DFERYTLEKMQNLGIFLGS-FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIF 385

Query: 283 VQTGTQQTGN 254
              G    GN
Sbjct: 386 ATVGDVNNGN 395


>AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin
           related protein 1 protein.
          Length = 109

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 275 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 454
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 455 INFLVSLLKKH-WQNVRSL 508
                +L +K+ W+N++ +
Sbjct: 70  EKSAATLKRKYWWKNIKMM 88


>AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 275 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 454
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 455 INFLVSLLKKH-WQNVRSL 508
                +L +K+ W+N++ +
Sbjct: 70  EKSAATLKRKYWWKNIKMM 88


>AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 275 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 454
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 455 INFLVSLLKKH-WQNVRSL 508
                +L +K+ W+N++ +
Sbjct: 70  EKSAATLKRKYWWKNIKMM 88


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 392 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 535
           SV + H+ ++P+ L Q   L+  F  +     W+ +R   MKS +G P
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 245 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 364
           I +IP   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,390
Number of Sequences: 27780
Number of extensions: 290702
Number of successful extensions: 656
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)