Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5p03
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27080-1|CAA81600.1| 257|Caenorhabditis elegans Hypothetical pr... 285 3e-77
Z99279-3|CAB16495.1| 298|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z30317-1|CAA82967.1| 213|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical ... 29 3.0
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 29 3.9
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 29 3.9
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ... 29 3.9
Z83129-2|CAB63327.1| 318|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z29560-10|CAA82663.1| 296|Caenorhabditis elegans Hypothetical p... 27 9.1
>Z27080-1|CAA81600.1| 257|Caenorhabditis elegans Hypothetical
protein F55H2.2 protein.
Length = 257
Score = 285 bits (698), Expect = 3e-77
Identities = 133/191 (69%), Positives = 161/191 (84%)
Frame = +3
Query: 93 GKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVM 272
GKDR+A+FPSR AQ L+K RL GA KGH LLKKKADAL +RFR IL KI+E K LMGEVM
Sbjct: 5 GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64
Query: 273 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELA 452
KEAAFSLAEAKFT GDF+ V+QNV++AQ ++R KK+NV GV LP+F++YQDG D Y+L
Sbjct: 65 KEAAFSLAEAKFTAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDLT 124
Query: 453 GLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLER 632
GL +GG +A+LKKN+ A++LLVELA+LQT F+TLDE IK+TNRRVNAIEHVIIPR+E
Sbjct: 125 GLGKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIEN 184
Query: 633 TLAYIISELDE 665
TL YI++ELDE
Sbjct: 185 TLTYIVTELDE 195
>Z99279-3|CAB16495.1| 298|Caenorhabditis elegans Hypothetical
protein Y57G11A.3 protein.
Length = 298
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +3
Query: 351 KAQIKIRSKKDNVAGVTLPIFES---YQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLL 521
K IKI + ++ + +FE+ +D + ELA L G Q+L K+KK+F++
Sbjct: 21 KKPIKIEGRSGDLKQLKSALFENKGPVKDEAREEELAALKAGNQELKKMKKDFETGAVHN 80
Query: 522 VELASLQTSFVTLDEVIKIT 581
+E +T L+E K+T
Sbjct: 81 IENEDDETKIARLEERQKLT 100
>Z30317-1|CAA82967.1| 213|Caenorhabditis elegans Hypothetical
protein T16G12.4 protein.
Length = 213
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 616 MITCSMALTRLFVILITSSRVTNEVCSEANSTKSFTALWKFFFSF 482
+ITCS + +F++++ +T+ SEA ++ WK F F
Sbjct: 103 IITCSQLILYVFLLIVIPIFLTDYFASEAQRYMNYPHEWKVFKDF 147
>AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical
protein BE0003N10.1 protein.
Length = 745
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 317 SSCELSFSQRESSFFHHFTHKGFSLNDF 234
S +L SQR+ SF H+ GF++N+F
Sbjct: 386 SVAQLLGSQRKKSFMLHYEFPGFAINEF 413
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 120 SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 278
++G Q G LA K GL K++ + + F ++ K + TLM +KE
Sbjct: 87 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 139
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 120 SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 278
++G Q G LA K GL K++ + + F ++ K + TLM +KE
Sbjct: 191 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 243
>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
protein Y46G5A.1a protein.
Length = 1085
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 372 SKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELAS 536
SK+D V P ++ S Y+ + +RGG LA+ ++ +S +L+ AS
Sbjct: 980 SKRDFVQSSNTPTTTTHSSSSHRYQHSNSSRGGTPLAQRLRDERSGQVVLLSRAS 1034
>Z83129-2|CAB63327.1| 318|Caenorhabditis elegans Hypothetical
protein W06G6.3 protein.
Length = 318
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -3
Query: 376 LDLILI*ALVTFCRTTWLKSPVVNLASAKEKAASFITSPIRVLVSMILLKII 221
L +++ ++VTFC + W++ +V KEK A S +L++M L+K +
Sbjct: 181 LAFLMVTSVVTFCGSLWIRHFLVRF--LKEKTARL--SKTTILLNMQLVKAL 228
>Z29560-10|CAA82663.1| 296|Caenorhabditis elegans Hypothetical
protein K03H1.11 protein.
Length = 296
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 399 TLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVT 557
TL + Y D + E+ G GG AKL + FQ++ + L ++ TS +T
Sbjct: 140 TLALLAGY-DKLEKVEIEGCNLGGDTEAKLLRCFQASFQTLTQIDLKGTSQIT 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,419
Number of Sequences: 27780
Number of extensions: 308333
Number of successful extensions: 786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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