Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5o15
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 46 4e-06
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 31 0.15
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 29 0.35
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.35
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 29 0.62
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 29 0.62
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 0.82
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 1.4
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 27 1.9
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 1.9
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.5
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 27 2.5
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 26 3.3
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 3.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 3.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 4.4
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 4.4
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 4.4
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 26 4.4
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.8
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 25 5.8
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 7.6
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 7.6
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 25 7.6
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 46.0 bits (104), Expect = 4e-06
Identities = 36/115 (31%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Frame = +3
Query: 234 EDLQLAAELGK--TLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALRE-VNDS-RL 401
+ LQ+ + K +L E+N E + L++ + ++++ +E+ L K LRE DS +L
Sbjct: 479 KQLQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRK---LLREQTQDSQKL 535
Query: 402 RIY-EQLELSIQDLERANHRLAVDHAAD-KKHIKSLCSNIDTVEAKCEELQKTVD 560
R+ EQLEL QDL++A + ++D + IKSL S++ +A+C Q+ ++
Sbjct: 536 RLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKIN 590
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.7 bits (66), Expect = 0.15
Identities = 20/82 (24%), Positives = 39/82 (47%)
Frame = +3
Query: 225 QGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLR 404
Q + LQ + + L R + L + Q I +QE++ L + LR+ ND++L
Sbjct: 1229 QQVKSLQSTVDSLQLELNRLQSLPVSNDQTDTPIISGSQEVQLLYESNSVLRKDNDAKLG 1288
Query: 405 IYEQLELSIQDLERANHRLAVD 470
++LE ++ L + + L +
Sbjct: 1289 KIQELEKEVEKLNASLNPLQTE 1310
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.5 bits (63), Expect = 0.35
Identities = 25/99 (25%), Positives = 47/99 (47%)
Frame = +3
Query: 165 ELNGLNSLDLWDYTVELECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQE 344
E NG +L L D+ +E L T QL + K + E + L+ AL+ ++
Sbjct: 621 ETNGYFTL-LNDFNASMEELLNTHSNQLLISMTK-ITEHFQSLDEALQSARSSCAVPNSS 678
Query: 345 IEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRL 461
++ + E+ DS+ + + LE S+QD+ ++ +L
Sbjct: 679 LDLIVS------ELKDSKNSLLDALEHSLQDISMSSQKL 711
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 29.5 bits (63), Expect = 0.35
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +1
Query: 238 ICNWRPNSGKPYSNATRNSRQPFASIKMLL----KIKHKKSNILQSKRLLCE 381
I +W+ S N + ++ F SI M+L K +++KSN+L + R LCE
Sbjct: 237 IPSWKSRSSDSKYNDHQFVKKNFFSIIMVLESLAKSQYRKSNVLAADRSLCE 288
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 28.7 bits (61), Expect = 0.62
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +3
Query: 246 LAAELGKTLLERNKELETALRQHQNVIEDQA-----QEIEYLTKQTVALREVNDSRLRIY 410
L LGK E +E ++A + + +E++ QE++ L KQ E+ +SRL+
Sbjct: 80 LLGTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEILESRLQEQ 139
Query: 411 EQLELSIQDLERANHRLAVDH 473
++ L +L+R + + +D+
Sbjct: 140 RKVALDELELDRNDLKKVLDN 160
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.7 bits (61), Expect = 0.62
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = +3
Query: 234 EDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRL---R 404
E L +L + +NKELE +++ N I+ +E+E ++ L + + +
Sbjct: 1096 ESLNDKDQLYQLQATKNKELEAKVKECLNNIKSLTKELENKEEKCQNLSDASLKYIELQE 1155
Query: 405 IYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEEL 545
I+E L L + DLE + D + +K + +N + K +L
Sbjct: 1156 IHENLLLKVSDLENYKKKYE-GLQLDLEGLKDVDTNFQELSKKHRDL 1201
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.3 bits (60), Expect = 0.82
Identities = 24/101 (23%), Positives = 39/101 (38%)
Frame = +3
Query: 213 LECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVND 392
L C T+D + L LLE NK L L H+N + ++ +Q + + E
Sbjct: 1000 LRCENITKDSETRVAL---LLEENKHLNNELSSHRNAEKQHLEKENDYKQQLLLVTEDLR 1056
Query: 393 SRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNI 515
YE+ L D +L D+ + ++ L I
Sbjct: 1057 KTREDYEKELLRHADARSTLQKLREDYTKALEQVEDLNKEI 1097
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = +3
Query: 231 TEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLR 404
T +Q E + +L+++ E + A + HQ +++ +E+E K +++ E N +R+R
Sbjct: 1597 TTFVQKEWEKRREILQKDVEEQVA-QSHQKQLDNIRKELEMRNKLKLSMLEKNLARVR 1653
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 324 IEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQ 434
I+ + Q I+ + T L NDSR+RIY + S++
Sbjct: 447 IQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLE 483
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 27.1 bits (57), Expect = 1.9
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +3
Query: 198 DYTVELECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVAL 377
DY +E L +Q E +TL+E+ + + +NV+ +Q ++++ L K+
Sbjct: 74 DYVACIEELLDIYPMQGGREYLETLVEKYNLHMSGIENLENVLLEQKEQLQQLEKRQT-- 131
Query: 378 REVNDSRLRIYEQLELSIQDLER 446
+ +R I ++ IQ LER
Sbjct: 132 -DQVSARENILQRETSEIQRLER 153
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +3
Query: 276 ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANH 455
E+ KE+ AL + + + +EIE L + L+ + + + + +I DLE N
Sbjct: 933 EKFKEVSQALAEANEKLNARDEEIERLKVDIIGLQNASLNMQSLKDSDNRTISDLESKNK 992
Query: 456 RL 461
L
Sbjct: 993 EL 994
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 2.5
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 252 AELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQ-LELS 428
AE T L R EL+ L Q ++ +++ K A + +S L + ++ +
Sbjct: 183 AERAATAL-REAELKHRLAQANADVDVANSKLDIALKNEAAWKAERESSLAHQKAVIDSA 241
Query: 429 IQDLERANHRLAVDHAADKK 488
+LERA H AV A KK
Sbjct: 242 RAELERARHEAAVADATYKK 261
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 486 KHIKSLCSNIDTVEAKCEELQKTVD 560
K ++ +CS+I E+ +EL+KTVD
Sbjct: 301 KRVEVVCSSISYKESDKKELEKTVD 325
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 270 LLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYE 413
LL +NK + +H N + Q EYL T++++ +N+S + E
Sbjct: 769 LLVKNKISLDDVLKHHNKYKFGKQSTEYLKINTLSMKSLNNSSRKFLE 816
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/77 (20%), Positives = 35/77 (45%)
Frame = +3
Query: 198 DYTVELECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVAL 377
D +V +CL ED+ +A E+ + ++ +++ L + N+ E + Q+V
Sbjct: 128 DASVRSQCLLKYEDIPIAMEMSQNWIDWEEKIAERLLEGSNI---SGVETSHYNAQSVKN 184
Query: 378 REVNDSRLRIYEQLELS 428
+ N+ E ++S
Sbjct: 185 KTSNEDLFDTNEMRKIS 201
>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 350 FDFLCLIFNNILMLAKGCLEFLVAFE*GFPEFGRQLQIFSSLQAL 216
F + L+F+ + L G L L++ GFP G + + L AL
Sbjct: 61 FSLIVLLFSLMFSLTFGSLLGLISLALGFPSVGYRYVLLPILNAL 105
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/70 (20%), Positives = 30/70 (42%)
Frame = +3
Query: 336 AQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNI 515
+++++ LT L + + + + + L S Q + H L DH + +L +
Sbjct: 758 SEDVKRLTANVETLTQDSKAMKQSFTSLVNSYQSISNLYHELRDDHVNMQSQNNTLLESE 817
Query: 516 DTVEAKCEEL 545
++ CE L
Sbjct: 818 SKLKTDCENL 827
Score = 25.8 bits (54), Expect = 4.4
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Frame = +3
Query: 210 ELECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVN 389
+L+ TE+LQLA ER L T + QN ++D + + L++ LR +
Sbjct: 1600 KLKLASTTEELQLAEN------ER-LSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLE 1652
Query: 390 DSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTV---EAKCEEL 545
DS + ++ ++ +E L A + + + ++D + + +CE L
Sbjct: 1653 DSVASLQKECKIKSNTVESLQDVLTSVQARNAELEDEVSRSVDKIRRRDDRCEHL 1707
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 4.4
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 171 NGLNSLDLWDYTVELECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIED-QAQEI 347
N +N + + ++LE TE LQ + K LLERN+ L+ AL +N ++ +
Sbjct: 315 NSINEIQTQNRDLKLE----TEKLQ---DQIKALLERNQSLQEALETVKNDEKNLREMNA 367
Query: 348 EYLTKQTVALREVNDSRLRI 407
Y T+ A +++N+ I
Sbjct: 368 NYETEMKEARQKLNNKEALI 387
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 214 WSACKELKICNWRPNSGKPYSNATRNS-RQPFASIKMLLKIKHK 342
WSA E+ +C WR + P+ N N+ + + K L KI K
Sbjct: 436 WSAPLEIDVCYWRKLA--PFQNMDTNTFLETITNPKKLYKICQK 477
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 111 LDVKMSEEQEQCDSFNSWELNGLNSLDLWDYTVELECLQGTED 239
LD+ QE D W G +L+ WD+ + EC + +D
Sbjct: 654 LDIASQIAQELDDPLK-WRSLGDAALNAWDFVLAQECFEKGKD 695
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 221 PARN*RFATGGRTRENPTRTQQGTRDSPSPAS 316
P RN F+ ++ +N T + SPSP+S
Sbjct: 197 PLRNHNFSNPSKSSKNGVHTINNMQSSPSPSS 228
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 238 ICNWRPNSGKPYSNATRNS 294
IC+W PNS +S +NS
Sbjct: 349 ICDWIPNSSNMFSMIVKNS 367
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 231 TEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLT 359
T +Q+ + +LE+NKELE + +V +++++ Y T
Sbjct: 358 TPPVQVGNDREDEVLEKNKELENVSKNSISVQISESEKVSYDT 400
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.0 bits (52), Expect = 7.6
Identities = 23/96 (23%), Positives = 43/96 (44%)
Frame = +3
Query: 270 LLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERA 449
LLER K++ A+RQ + I D + ++ + + + ++ L L I D +
Sbjct: 689 LLEREKKMSDAMRQTKLTIVDDHNSRKLESQYNEFISQCSAHYENVF-SLNLVISDAMKL 747
Query: 450 NHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTV 557
+ +A +K+ NI T++A E L K +
Sbjct: 748 TNNIA-------DALKNNKVNIGTIKASLEVLVKCI 776
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 7.6
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +3
Query: 156 NSWELNGLNSLDLWDYTVELECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQ 335
NSW + LN+ YT ++ +GT ++ + L L E++ L Q + +
Sbjct: 525 NSWSVRLLNAAGQTLYTQDVHTTKGTLSIESFSRLSYLL-----EVQILLFNVQTACQAR 579
Query: 336 AQEIEYLTKQTVALRE 383
EYL AL E
Sbjct: 580 GMPFEYLPIPPKALIE 595
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 222 LQGTEDLQLAAELGKTLLERNKELETALRQHQNVI 326
+Q L+L +L ++E N +LET NV+
Sbjct: 160 VQAQMPLELKCQLADIVIENNSDLETLYENIHNVL 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,258
Number of Sequences: 5004
Number of extensions: 41526
Number of successful extensions: 154
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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