Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5o14
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   1.0  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    23   7.3  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    23   7.3  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    23   7.3  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    23   9.6  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    23   9.6  

>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 257 SKTLIDLEKKKLYDIN*L---SLEKANNSSHWLQNEELKLHL 141
           SKTL DL+K+KL + N +   SL K  N S  LQ E+L   L
Sbjct: 152 SKTLTDLKKRKLVERNKIMYFSLRKGPNFS--LQIEKLNTDL 191


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 237 RKKKVVRYKLAFIRKSQQLI 178
           R+K ++  KLA +++ QQLI
Sbjct: 331 RQKDIIDLKLACVKEKQQLI 350


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 236 EKKKLYDIN*LSLEKANNSSHWL 168
           E+KK Y +N +  EK NN   +L
Sbjct: 181 ERKKKYGLNQMKEEKTNNIKKFL 203


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 217 SYNFFFSRSIKVFDYIPSDN 276
           S++ FF++ +K  D I SDN
Sbjct: 94  SFDSFFAQKLKYADLISSDN 113


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 230 KKLYDIN*LSLEKANNSS 177
           K L DI+  S++KANNSS
Sbjct: 171 KDLSDISSSSMKKANNSS 188


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 14  YCSKQLPSTTRALQLSM 64
           +C+++L S  RALQ+S+
Sbjct: 373 FCAERLTSLVRALQISL 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,049,662
Number of Sequences: 5004
Number of extensions: 16118
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)