Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5o14
         (298 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    29   0.79 
Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical pr...    27   3.2  
U28928-14|AAL16319.1|  197|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z69904-1|CAA93777.1|  420|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    25   7.4  

>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 136  YLRCNFSSSFCNQCDELLAFSNE 204
            YLRC++ +S   QC E   FSN+
Sbjct: 1126 YLRCSYGASKLQQCSEDRVFSND 1148


>Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical
           protein F54B8.8 protein.
          Length = 285

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 297 FFFQCSFIIRWNIIKNFDRPRKKKVVRYKLAFI 199
           F+F C F +  N I  F R   +KVV   L F+
Sbjct: 55  FYFLCEFFVSINKIYLFSRQISEKVVIKNLIFL 87


>U28928-14|AAL16319.1|  197|Caenorhabditis elegans Hypothetical
           protein C44B7.1 protein.
          Length = 197

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 83  YHTKGKDLFFYKAELDFNI*DVILVLRFVTSVM 181
           +H+K K+L   + ELD  I +++LVL    S M
Sbjct: 3   HHSKAKELLQQRDELDGKIKELMLVLETNNSTM 35


>Z69904-1|CAA93777.1|  420|Caenorhabditis elegans Hypothetical
           protein ZK20.1 protein.
          Length = 420

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 89  TKGKDLFFYKAELDFNI*DVIL 154
           T GK+LF  + E++ N+ D++L
Sbjct: 298 TNGKELFRIQTEVELNLEDIVL 319


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -3

Query: 200 LEKANNSSHWLQNEELKLHLRY*NQVQ 120
           LE+   SS+ LQNEELKL LR   ++Q
Sbjct: 650 LEREVQSSN-LQNEELKLSLRNFEELQ 675


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,754,008
Number of Sequences: 27780
Number of extensions: 88920
Number of successful extensions: 189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)