Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5o14
         (298 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   2.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   5.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   5.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    19   9.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 248 LIDLEKKKLYDI-N*LSLEKANNSSHWLQNEELK 150
           LID  KK++YDI   + +E+    +  LQN ++K
Sbjct: 565 LIDNIKKEIYDILPEVDVEEILGEAKVLQNFDIK 598


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 31  TLNDASPSAEHARGAVTLSHKGKRSFF 111
           T+ND S S +     + LSHK +  ++
Sbjct: 238 TINDESFSLQDGILGMALSHKTQNLYY 264


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 131 FNI*DVILVLRFVTSVMSCWL 193
           F I  +   + +  +VMSCW+
Sbjct: 53  FKIAPLFKGIGYAAAVMSCWM 73


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 239 LEKKKLYDIN*LSL 198
           L+ KK++DIN L L
Sbjct: 106 LDWKKIFDINLLGL 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,088
Number of Sequences: 438
Number of extensions: 1141
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)