Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5o11
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     42   1e-04
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    28   1.3  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   4.0  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           26   4.0  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   5.3  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    26   5.3  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   7.0  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   7.0  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   7.0  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   9.2  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   9.2  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   9.2  

>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 32/50 (64%)
 Frame = +3

Query: 171 SENNISNADESNRMWASASFVGVLIIIGMPLWWKTTEVYRVSLPYEKISS 320
           S   ++  ++S + +A  SF  V+I++ +P+WWKTT   R SLP+E + +
Sbjct: 60  SNFQLNKPEKSLKRYALLSFY-VIILLAIPVWWKTTHYERSSLPFEDMEN 108


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 179 IFTSHFQHWPCLLIANYYEVYYNHCSLFFLQNEFKVYVINRKNTTFTVYQLF 24
           ++ S    WP LL+      Y  H  +FF+ N F  Y +      F + Q+F
Sbjct: 541 VYESSALTWP-LLLGPLRFFYEQHLQVFFMGNPFVWYSVISLVAFFVIVQIF 591


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 405 IQKAFAESDIIKIKIEKTVM-SERQQHILRSVVDMEKAVEE 524
           I K  A   + K K+ KTV  + +Q+HILR V ++ KAV +
Sbjct: 28  IAKPLAPKKLNK-KMMKTVKKASKQKHILRGVKEVVKAVRK 67


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 478 STFCGRWLIWRKPSKN*LLH 537
           S + GRW +W+K  KN  L+
Sbjct: 295 SEYFGRWYVWKKDIKNNALY 314


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +3

Query: 240 LIIIGMP---LWWKTTEVYRVSLPYEKISSFKPLSHF 341
           +I+ G+P   L+W   E +       KIS+FKP S +
Sbjct: 305 MILYGIPDIRLFWSLDERFSKQFLPNKISTFKPFSKY 341


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 545 RPRKYIPRGAKEIVVS 592
           +P +YIP GAK+I++S
Sbjct: 380 QPLRYIPEGAKKIILS 395


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 303 YEKISSFKPLSHFVTTEL 356
           Y+ +SSFKPL+H V  +L
Sbjct: 687 YDNMSSFKPLAHDVLKKL 704


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 378 ATASKIVSEI---QKAFAESDIIKIKIEKTVMSERQQHILRSVVDMEKAVEELASTLDLD 548
           +++S++  EI   +K+   SD+  ++ + + + E+ +   R V D+EK +  LA      
Sbjct: 184 SSSSRVKEEILVQEKSALVSDLASLQSDHSKVCEKLEVSSRQVQDLEKKLAGLAQQNTEL 243

Query: 549 QENIFHVVQKKS 584
            E I    QK+S
Sbjct: 244 NEKIQLFEQKRS 255


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 286 TGCRCRTKRFHRSNLYRIS 342
           TG R +T R HR N+Y +S
Sbjct: 536 TGRRIKTMRGHRGNIYSLS 554


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 183 YYFHFPFSTLAVFI 142
           YYFHF +  LAVFI
Sbjct: 240 YYFHFTWIGLAVFI 253


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 355 SSVVTKCDRGLNDEIFSY-GSDTL*T 281
           SS + KCD  + +E++SY  SD L T
Sbjct: 12  SSEIEKCDEDVEEELYSYPDSDFLVT 37


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
 Frame = +3

Query: 270  KTTEVYR----VSLPYEKISSFKPLSHFVTTELKVLANDDATASKIVSEIQKAFAESDII 437
            K+ EVY     ++  ++ +S  KP+   +    K L+      S +  ++Q      D I
Sbjct: 703  KSAEVYSHLETLTKTFKNLSEAKPIFDEIELLDKRLSETKTELSDLQGDLQGLDIRKDEI 762

Query: 438  KIKIEKTVMSERQQHILRSVVDMEKAVEELASTLDLDQENIFHVVQKKSLSHN 596
            + +++   +       L+ +V     +EE   T+D + E +  +    S++H+
Sbjct: 763  QSELDTLYLRRANLEKLQLLVKDISNLEEEIRTIDRETE-VLRIELPSSIAHH 814


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,802
Number of Sequences: 5004
Number of extensions: 53223
Number of successful extensions: 158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)