Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5o11
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0068 + 31439486-31439692,31441378-31441452,31441540-314416... 30 1.8
01_02_0098 - 11087875-11089110,11091744-11092022 30 1.8
03_01_0549 - 4102098-4102198,4102394-4102544,4102629-4102760,410... 29 2.4
04_04_1184 + 31558678-31558707,31559485-31559644,31559732-315603... 29 3.1
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 3.1
02_02_0233 + 8105765-8107840 29 3.1
01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816... 29 3.1
04_04_1697 - 35454337-35454576,35454657-35454888,35455045-354552... 28 5.4
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357... 28 5.4
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 28 7.2
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 7.2
10_08_0764 + 20417562-20417729,20417981-20418071,20418175-204182... 27 9.5
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 27 9.5
>03_06_0068 +
31439486-31439692,31441378-31441452,31441540-31441641,
31441739-31441792,31441888-31441980,31442224-31442316,
31443007-31443111,31443217-31443315,31444165-31444452
Length = 371
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 363 LANDDATASKIVSEIQKAFAESDIIKIKIEKTV--MSERQQHILRSVVDMEKAVEELAST 536
L +DD+ +S+ Q I++I E T+ R HIL +D++ +++L S
Sbjct: 297 LMDDDSMSSQYEEPDQPMQTMDQIMQILTEATIPPACSRINHILTDGLDLDDDMDDLDSD 356
Query: 537 LDLDQENIFHVV 572
D+D ++ +V
Sbjct: 357 SDIDVDSSGEIV 368
>01_02_0098 - 11087875-11089110,11091744-11092022
Length = 504
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +3
Query: 255 MPLWWKTTEVYRVSLPYEKI--SSFKP--LSHFVTTELKVLANDDATASKIVSEIQK 413
M L+ KT + ++ K+ S +P S+FV TE ++ ND +A K++ E+Q+
Sbjct: 182 MCLYLKTDQPEKIPTTVVKMQESGIQPNKFSYFVLTESYIMMNDIESAEKVLKELQE 238
>03_01_0549 -
4102098-4102198,4102394-4102544,4102629-4102760,
4102988-4103162,4103494-4103945,4104042-4104121,
4104342-4104408,4104709-4104814,4104924-4105033,
4105133-4105201,4105661-4105771,4106263-4106427,
4106639-4106725,4106974-4107027,4107101-4107240,
4107820-4107897,4108066-4108720
Length = 910
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 414 AFAESDIIKIKIEKTVMSERQQHILRSVV--DMEKAVEELASTLDLDQENI 560
A A SD+++ + TV +Q+ IL ++ D ++AVE + T+ + ENI
Sbjct: 708 AIAVSDVLRDDAKATVDRLQQEEILTFLLSGDRKEAVESIGRTVGIRSENI 758
>04_04_1184 +
31558678-31558707,31559485-31559644,31559732-31560394,
31560512-31560956,31561090-31561171,31561319-31561534
Length = 531
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +3
Query: 303 YEKISSFKPLSHFVTTELKVLANDDATASKIVSEIQKAFAESDIIKIKIEKTVMSERQQH 482
YE+ +FK + F ELK+ A + +KI SE+++ E K++ E +
Sbjct: 422 YEEAENFKHTARFKKEELKIEAWESLQKAKIESEMKR--IEEHAEKLRSEAMAKMAEKLE 479
Query: 483 ILRSVVDMEKA 515
+ R + + ++A
Sbjct: 480 MTRRLAEEKRA 490
>03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 462 MSERQQHILRSVVDMEKAVEELASTLDLDQENIFHVVQKKSLSHNIWVGNE 614
MSE++QHILRS M K V +S + + + + ++K + N +G E
Sbjct: 926 MSEKEQHILRSSDSMNKKVTNNSSIVGAPE--VVNEKKRKGDARNSSIGGE 974
>02_02_0233 + 8105765-8107840
Length = 691
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 128 YEVYYNHCSLFFLQNEFKVYVINRKNTTFTVYQLF 24
Y+ YYN C+L L +F +KNT +T+ +F
Sbjct: 286 YDAYYNLCNLLDLAFQF---FYTKKNTNYTIVGIF 317
>01_06_1728 +
39480252-39480450,39480552-39481224,39481554-39481638,
39481731-39481820,39481953-39482026,39482421-39482505,
39482582-39482668,39482797-39482927,39483642-39483723,
39483810-39483857,39484793-39484912
Length = 557
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 246 IIGMPLWWKTTEVYRVSLPYEKISSFKPLSH 338
+IG+PL K+TE++R LP + I++ H
Sbjct: 65 LIGLPLLLKSTEIHRSPLPSDAIAALSRRLH 95
>04_04_1697 -
35454337-35454576,35454657-35454888,35455045-35455252,
35455380-35455629,35456232-35456354
Length = 350
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 460 TVFSILIFIISDSANAFCISLTILDAVASSLAKTFS 353
++ S L+ II AFC++ +I + S+ A TF+
Sbjct: 230 SIASALVIIIGSGVLAFCLNFSIFYVIHSTTAVTFN 265
>02_03_0109 -
15333228-15334793,15335255-15335392,15335496-15335771,
15336357-15336422,15338140-15338487
Length = 797
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 481 CCCRSDITVFSIL-IFIISDSANAFCISL 398
C SDITVFS L F SDSA A ++L
Sbjct: 477 CITSSDITVFSPLHFFAASDSAEALLMTL 505
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 303 YEKISSFKPLSHFVTTELKVLANDDATASKIVSEIQKAF--AESDIIKIKIEKTVMSERQ 476
+E I + K + +ELK LA ++ ++ VSE KA + + K + E + +
Sbjct: 115 FEAIKAKKNERFGIISELKPLAAENKQYNEAVSEKLKAIEPLRNRLGKFRDENNAIRAQG 174
Query: 477 QHILRSVVDMEKAVEEL 527
I S+ ++EK+++ L
Sbjct: 175 AGICSSIEELEKSIKRL 191
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 486 LRSVVDMEKAVEELASTLD---LDQENIFHVVQKKSLSHNIWVGNERIM 623
+ + ++E + +LA ++D D E IFH + K S HN+ + +++
Sbjct: 670 MEDLFNLESDIVDLAISIDKTKTDAEEIFHGIDKMSSVHNLMARDFKLL 718
>10_08_0764 +
20417562-20417729,20417981-20418071,20418175-20418227,
20418259-20418417,20418493-20418564,20419186-20419258,
20419642-20419687,20420173-20420236,20420321-20420374,
20420430-20420540,20420924-20421016
Length = 327
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 213 WASASFVGVLIIIGMPLWWKTTEV 284
W +A + II+ M LWWK V
Sbjct: 172 WINAVIYAIQIILWMVLWWKPVRV 195
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +3
Query: 351 ELKVLANDDATASKIVSE--IQKAFAESDIIKIKIEKTVMSERQQHILRSVVDMEKAVEE 524
++KVL + + ++S +KA SD+ + +SE+ ++ + DM+ +E
Sbjct: 951 KIKVLETSEGSLKDVISSHVSEKAILTSDLETLGKSYADISEKNSNLDILISDMKAEIEN 1010
Query: 525 LASTL-DLDQENIFHVVQKKSLS 590
L + L D ++ H+ +LS
Sbjct: 1011 LRTKLTDSEETCQAHLANNSALS 1033
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,370
Number of Sequences: 37544
Number of extensions: 308103
Number of successful extensions: 784
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -