Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5o10
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.7
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 27 2.7
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 3.6
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 26 4.7
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 26 4.7
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 6.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 6.2
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 25 6.2
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 8.3
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 8.3
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 150 VTKRCAQVAIGCSRAAHQTALRGSTKPSPQ-LATLTPKVRAFVERSAA 290
+ K+ A I C +A+ T + T L T P+VRAF+E S A
Sbjct: 1845 MVKQAAYATIACFISAYDTPAKIVTPVYVSILKTYQPEVRAFIEFSLA 1892
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 424 TRQTLPGLNPARSYAPIGRATWSP 495
T Q+ P NPA +P+G A+ SP
Sbjct: 343 TPQSSPNFNPAMRRSPVGAASRSP 366
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 178 LDAAALPTKLLCEGRRSLPHSWPLLLQRSARSWSAALLCASRSTCT 315
LD+++ + + R SW LLQ AR+W L AS+++ T
Sbjct: 158 LDSSSTVIQRILPAIREHGISWSWLLQLIARTWMNTLKIASQASKT 203
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 47 NFIIKLSRV-SPFAALIN*QRKLHEA 121
NF+ KLS + S AAL+N QRKL +A
Sbjct: 509 NFLQKLSTLDSSLAALVNVQRKLIKA 534
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -1
Query: 520 ADFWPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSYWG 389
A F P A+ L + E NV S T G +QLSYWG
Sbjct: 48 ATFTPDLAKRLAVLVKMEK-NVMRSMEVTIRGRRDCARQLSYWG 90
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 408 WLARTDPADVARVESRT 458
WL TDP+ V+RVE T
Sbjct: 419 WLQNTDPSTVSRVEVST 435
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 6.2
Identities = 7/29 (24%), Positives = 18/29 (62%)
Frame = +2
Query: 101 QRKLHEAFQDGVFYKERYEEMCSSGDWMQ 187
Q + + + + ++YK++YE+ C + +Q
Sbjct: 402 QSSVSDLYSERLYYKQKYEQTCQEVERLQ 430
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 388 CPNTITVGWPGQTRQTLPGLNP 453
C ++ + WPG +RQ L L+P
Sbjct: 294 CFSSTPIPWPGFSRQALKNLSP 315
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 424 TRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRI 549
TR+ + L+PA S A IG T+ P+ + + + P +
Sbjct: 202 TRENISSLDPAISAASIGNVTFGQPNIPSTTTDFAGLAAPNM 243
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 448 NPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITR 555
NP + P+ +P P PP TTSP I R
Sbjct: 228 NPVTT-PPVNNTLLTPPAPPVELPPVTTTSPNAIIR 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,509
Number of Sequences: 5004
Number of extensions: 44841
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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