Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5o10
(592 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical pr... 89 3e-18
Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical pr... 89 3e-18
Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical pr... 89 3e-18
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 83 1e-16
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 83 1e-16
Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical pr... 79 3e-15
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 32 0.35
Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z68270-4|CAE46687.1| 755|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68270-3|CAA92568.1| 769|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL032637-6|CAA21620.2| 422|Caenorhabditis elegans Hypothetical ... 29 3.3
Z79639-3|CAB01918.1| 385|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 28 4.3
U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 rela... 28 4.3
U41532-5|AAF99906.2| 111|Caenorhabditis elegans Hypothetical pr... 28 4.3
AL032626-20|CAD45605.1| 445|Caenorhabditis elegans Hypothetical... 28 4.3
AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical... 28 4.3
AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid... 28 4.3
AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell fac... 28 4.3
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 27 7.5
Z82070-6|CAB04910.1| 321|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z74038-4|CAA98495.1| 125|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 27 10.0
>Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical
protein R11A5.4b protein.
Length = 582
Score = 88.6 bits (210), Expect = 3e-18
Identities = 40/113 (35%), Positives = 63/113 (55%)
Frame = +3
Query: 249 LTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDP 428
L KV+ F+ A L +P + +CDGS+ EA +L Y+N ++ RTDP
Sbjct: 53 LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 112
Query: 429 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM 587
DVARVES+T++ + + D V + G + +G++++P D + RFPGCM
Sbjct: 113 KDVARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCM 165
>Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical
protein R11A5.4d protein.
Length = 618
Score = 88.6 bits (210), Expect = 3e-18
Identities = 40/113 (35%), Positives = 63/113 (55%)
Frame = +3
Query: 249 LTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDP 428
L KV+ F+ A L +P + +CDGS+ EA +L Y+N ++ RTDP
Sbjct: 17 LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 76
Query: 429 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM 587
DVARVES+T++ + + D V + G + +G++++P D + RFPGCM
Sbjct: 77 KDVARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCM 129
>Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical
protein R11A5.4a protein.
Length = 654
Score = 88.6 bits (210), Expect = 3e-18
Identities = 40/113 (35%), Positives = 63/113 (55%)
Frame = +3
Query: 249 LTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDP 428
L KV+ F+ A L +P + +CDGS+ EA +L Y+N ++ RTDP
Sbjct: 53 LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 112
Query: 429 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM 587
DVARVES+T++ + + D V + G + +G++++P D + RFPGCM
Sbjct: 113 KDVARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCM 165
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 83.4 bits (197), Expect = 1e-16
Identities = 42/115 (36%), Positives = 62/115 (53%)
Frame = +3
Query: 243 ATLTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLART 422
A+L+PKV+ FV A L P +++CDGS+ E L Y+N +L RT
Sbjct: 38 ASLSPKVQRFVAEKAELMNPAGIYICDGSQKEYDDIVDKLVERGVLTPLKAYENNYLCRT 97
Query: 423 DPADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM 587
DP DVARVES+T++ + + D V G + +G ++S + + RFPGCM
Sbjct: 98 DPRDVARVESKTWMVTKDKYDSVCHTPDGVRPIMGQWMSEEQFGVELDSRFPGCM 152
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 83.4 bits (197), Expect = 1e-16
Identities = 42/115 (36%), Positives = 62/115 (53%)
Frame = +3
Query: 243 ATLTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLART 422
A+L+PKV+ FV A L P +++CDGS+ E L Y+N +L RT
Sbjct: 38 ASLSPKVQRFVAEKAELMNPAGIYICDGSQKEYDDIVDKLVERGVLTPLKAYENNYLCRT 97
Query: 423 DPADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM 587
DP DVARVES+T++ + + D V G + +G ++S + + RFPGCM
Sbjct: 98 DPRDVARVESKTWMVTKDKYDSVCHTPDGVRPIMGQWMSEEQFGVELDSRFPGCM 152
>Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical
protein R11A5.4c protein.
Length = 587
Score = 78.6 bits (185), Expect = 3e-15
Identities = 34/97 (35%), Positives = 55/97 (56%)
Frame = +3
Query: 297 QPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDPADVARVESRTFICSDR 476
+P + +CDGS+ EA +L Y+N ++ RTDP DVARVES+T++ +
Sbjct: 2 RPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDPKDVARVESKTWMVTKN 61
Query: 477 ESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM 587
+ D V + G + +G++++P D + RFPGCM
Sbjct: 62 KYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCM 98
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +1
Query: 397 TITVGWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCPTDS 576
T+T P T PG P ++ P +T P PW T+PP T R P S
Sbjct: 134 TVTPPSPSVTPGGRPGSTPPATFPPGSISTVRYTPGPTPPGPWTYTAPPYYTYRTVPPAS 193
>Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical
protein ZC376.6 protein.
Length = 1152
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -3
Query: 185 ASNRHLSTSLRNALYKKHHLEKPRAIFVVNLSERQMEKHERV 60
A+ RH SLRN+LY K K +++++ E Q EK E V
Sbjct: 683 AAQRH-DASLRNSLYDKSIFLKLPVRYILSVMEYQHEKFENV 723
>Z68270-4|CAE46687.1| 755|Caenorhabditis elegans Hypothetical
protein ZC410.4b protein.
Length = 755
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -3
Query: 308 VLRLAQSSAALHERADLWSKSGQLWGRLRRPSQSSLVGSAAASNRHLSTSLRNALYKKHH 129
+LR + + +L SG RLRRPSQ S G+ +++ RH + + H
Sbjct: 4 LLRAVGFGRSSNTNRNLRPSSGASGDRLRRPSQMS-AGAQSSATRHSQGDKDKVVQSRIH 62
Query: 128 LEKP 117
++P
Sbjct: 63 DQEP 66
>Z68270-3|CAA92568.1| 769|Caenorhabditis elegans Hypothetical
protein ZC410.4a protein.
Length = 769
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -3
Query: 308 VLRLAQSSAALHERADLWSKSGQLWGRLRRPSQSSLVGSAAASNRHLSTSLRNALYKKHH 129
+LR + + +L SG RLRRPSQ S G+ +++ RH + + H
Sbjct: 4 LLRAVGFGRSSNTNRNLRPSSGASGDRLRRPSQMS-AGAQSSATRHSQGDKDKVVQSRIH 62
Query: 128 LEKP 117
++P
Sbjct: 63 DQEP 66
>AL032637-6|CAA21620.2| 422|Caenorhabditis elegans Hypothetical
protein Y43F8C.6 protein.
Length = 422
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 182 MQPRCPPNCSARVDEAFPTAGHSYSK 259
M P N +A+V E F TAGH++ K
Sbjct: 144 MDQPAPVNLAAKVAEVFLTAGHAFQK 169
>Z79639-3|CAB01918.1| 385|Caenorhabditis elegans Hypothetical
protein F54E4.4 protein.
Length = 385
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 187 AALPTKLLCEGRRSLPHSWPLLLQRSARSWSAALLCASR-STCTCAT 324
A +PT +CE + SL W + S + L CA TC CA+
Sbjct: 247 APIPTPKVCEDKHSLCCFWATTGECSRNPFWMKLNCAKTCGTCDCAS 293
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 388 CPNTITVGWPGQTRQTLPGLNPARSYAPIG-RATWSPRLAPA-RSPPWGTTSPPRITRRP 561
CP P + + P P S A G RA + R PA R+PP T +PP T RP
Sbjct: 276 CPQRQDDRTPPSSGTSAPQPPPRGSTAAPGTRAPPATRAPPATRAPPATTRAPP-ATTRP 334
Query: 562 CP 567
P
Sbjct: 335 AP 336
>U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 related
protein 1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +1
Query: 394 NTITVGWP---GQTRQTLP-GLNPAR--SYAPIGRATWSPRLAPARSPP 522
N++ + WP G + L G A+ S +PI RAT SPR P+ PP
Sbjct: 393 NSLEISWPIVQGASGYFLQIGFGDAKEQSVSPIKRATTSPRKQPSIVPP 441
>U41532-5|AAF99906.2| 111|Caenorhabditis elegans Hypothetical
protein F11D5.6 protein.
Length = 111
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 475 GRATWSPRLAPARSPPWGTTSPPRITRRPCPTDSL 579
GR + +P PA PP S P +R C D+L
Sbjct: 73 GRLSKTPSSTPAPPPPQPVVSTPAKAKRQCKFDNL 107
>AL032626-20|CAD45605.1| 445|Caenorhabditis elegans Hypothetical
protein Y37D8A.23b protein.
Length = 445
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 136 NTILKSLVQFSLLIYQSGKWRNTREFYNKIIAI 38
+ +L++L+ +L Q+G W T EF N+I+ +
Sbjct: 10 DAVLENLIAKEILP-QTGNWEGTEEFLNRIVQV 41
>AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical
protein Y37D8A.23a protein.
Length = 508
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 136 NTILKSLVQFSLLIYQSGKWRNTREFYNKIIAI 38
+ +L++L+ +L Q+G W T EF N+I+ +
Sbjct: 10 DAVLENLIAKEILP-QTGNWEGTEEFLNRIVQV 41
>AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid
decarboxylase protein.
Length = 508
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 136 NTILKSLVQFSLLIYQSGKWRNTREFYNKIIAI 38
+ +L++L+ +L Q+G W T EF N+I+ +
Sbjct: 10 DAVLENLIAKEILP-QTGNWEGTEEFLNRIVQV 41
>AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell factor
1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +1
Query: 394 NTITVGWP---GQTRQTLP-GLNPAR--SYAPIGRATWSPRLAPARSPP 522
N++ + WP G + L G A+ S +PI RAT SPR P+ PP
Sbjct: 393 NSLEISWPIVQGASGYFLQIGFGDAKEQSVSPIKRATTSPRKQPSIVPP 441
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 415 PGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTS 537
P R TLP + + +P SP +P SPP T S
Sbjct: 191 PPPNRSTLPSVETSSGNSPQTPYPGSPEASPQPSPPKNTAS 231
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = +1
Query: 397 TITVGWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCP 567
T+T P T PG P ++ P +T P PW T PP R P
Sbjct: 211 TVTPPSPSVTPGGRPGSTPPATFPPGSVSTVRYTPGPTPPAPWTYTVPPYSGYRTIP 267
>Z82070-6|CAB04910.1| 321|Caenorhabditis elegans Hypothetical
protein W04E12.6 protein.
Length = 321
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 316 TCTCSGWHRAALRSTNARTFGVRVASCG 233
+C G H A++ S TF +ASCG
Sbjct: 210 SCVLLGGHLASIHSLTENTFVNNIASCG 237
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 460 SYAPIGRATWSPRL--APARSPPWGTTSPPR 546
S P G P++ +P + PP GTTSPPR
Sbjct: 390 SSKPSGPVLPKPQVNGSPKKWPPVGTTSPPR 420
>Z74038-4|CAA98495.1| 125|Caenorhabditis elegans Hypothetical
protein F58B4.3 protein.
Length = 125
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 313 CTCSGWHRAALRSTNARTFGVRVASC 236
CT +G AA N+ FGV A+C
Sbjct: 67 CTLNGMQNAAANCQNSSAFGVNGATC 92
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein
E01G6.1 protein.
Length = 1391
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1
Query: 385 DCPNTITVGWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPP 522
+ P+ + PG T QT PG PA PIG P + AR P
Sbjct: 1013 ETPDVPSSNVPGMT-QTFPGGPPAPGMGPIGMPDPIPGIENARILP 1057
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,634
Number of Sequences: 27780
Number of extensions: 281575
Number of successful extensions: 1112
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -