Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5o08
         (541 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   0.98 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   3.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.2  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 346 AKSNPAKGADASKPVSLSPTPRSQL-EAATTTLYPNMSMAT 227
           A+      AD SKPV  +P P   + E +T+T     +++T
Sbjct: 413 ARPPSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVST 453


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = -1

Query: 355 QGKAKSNPAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTPNSV 191
           Q   KS+  K   A      SPTP S     +T+   +    TA   +  +PN +
Sbjct: 135 QSVEKSSKLKNKSAPILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPNYI 189


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 225 AVAIDMFGYSVVVAASSCDLGVGLKE 302
           AV +   G +V     SCD  VGL++
Sbjct: 33  AVQVPQGGGAVQPDPGSCDPSVGLRQ 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,183
Number of Sequences: 336
Number of extensions: 2954
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)