Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5o08
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 33 0.036
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.082
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 30 0.19
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 29 0.44
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 29 0.58
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.0
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 2.3
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.3
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 26 3.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 26 3.1
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 4.1
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 26 4.1
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 5.4
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 25 7.2
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 25 9.5
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 25 9.5
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 9.5
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 9.5
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 32.7 bits (71), Expect = 0.036
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 501 PWKNRIQIA*RQT*TANSLTDYLKPQTGSRTTWRSVKPSFVLLYP-RRSPREKQKAIQQK 325
PW+NR ++ T SL + L+ + +T + S + P ++S REK+K + ++
Sbjct: 1079 PWRNRENLSHNNNTTRASLRELLEQEKADASTTTVLSDSRFMKAPTKKSQREKKKELSKQ 1138
Query: 324 APM 316
P+
Sbjct: 1139 VPI 1141
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.5 bits (68), Expect = 0.082
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Frame = -1
Query: 358 PQGKAKSNPAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTPNSV*LYR 179
P S P A+++ S S TP + + + TTT + +++ ++ T S
Sbjct: 283 PSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTP 342
Query: 178 PCPANST----ASS*PHESVTLPEQPSVTTTSLFIVENHKKKTLTIVKLFNILTHCSKNI 11
NST ASS P SV S ++T L V + + + L + + S ++
Sbjct: 343 LSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSV 402
Query: 10 RAT 2
+T
Sbjct: 403 SST 405
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 30.3 bits (65), Expect = 0.19
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 468 QT*TANSLTDYLKPQTGSRTTWRSVKPSFVLLYPRRSPREKQKAIQQKAP 319
+T T TD +K G T SV+ F+LL PR+ + Q K P
Sbjct: 253 ETLTRQEATDLIKQYGGKVTGAPSVRTDFILLGENAGPRKVETIKQHKIP 302
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 29.1 bits (62), Expect = 0.44
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = -1
Query: 511 VKLAVEKPHPNSLEANINCQF---IDRLLKAANRKPNDVEISKAFLRPLVSA*KPQGKAK 341
+K +P N + N C + RL A + +E+ +LR L P K
Sbjct: 24 IKCDQRRPCSNCIAYNYECTYGQPFKRLRHAPEKYIEFLELRLKYLRGLAEESDPNLKLP 83
Query: 340 SNPAKGADASKPVSLSPTPRS 278
S A D PV+ SP RS
Sbjct: 84 SFLAPPNDKDSPVNQSPWKRS 104
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 28.7 bits (61), Expect = 0.58
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 336 LLFAFPWGFYADTRGRRKALLISTSFGFLFAALSSLSMNW 455
L+ A W ADT GRR A ++ F +FA ++ S N+
Sbjct: 132 LVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNF 171
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 301 SLSPTPRSQLEAATTTLYPNMSMATATTI 215
S+ P P + + TTT+ P SM T TT+
Sbjct: 68 SIVPPPSTSHNSTTTTVPPTTSMNTTTTV 96
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.3
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 538 HSPSRVITNVKLAVEKPHPNSLEANINCQFIDRLLKAANRKPNDVEISKAFLRPLVSA*K 359
HS R + V ++ H NSLEAN+ D KA N + ++ ++ LV K
Sbjct: 142 HSAPRSLEGVT-SLSDSHFNSLEANLKAISKDSNNKAHNNRYDESSLTNPEFSILVERLK 200
Query: 358 P-QGKAKSNPAKGADASKPVSLSPT 287
+ +S + + + VSLSP+
Sbjct: 201 SIEENLQSLQERISHCERSVSLSPS 225
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 1.8
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = -1
Query: 337 NPAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTP-NSV*LYRPCPANS 161
NP D++ S++PT + +ATT + S + T T +S Y A+
Sbjct: 134 NPIPRGDSATSTSIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASP 193
Query: 160 TASS*PHESVTLPEQPSVTTTSLFIVENHKKKTLTIVKLFNILTHCSKNIRAT 2
T SS T+ S ++ S F++ N T +++ T S ++ T
Sbjct: 194 TTSSNSDNEYTVDVITS-SSLSSFVITNVDSTTTSVINYIGASTLESSSLTNT 245
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = -1
Query: 271 EAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVTLPEQPSVTTTSL 92
E +T T+ P + TT+++ TP +V T E+ T+ P+ T+T
Sbjct: 852 ETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGT 911
Query: 91 FIVENHKKKTLT 56
V T+T
Sbjct: 912 TTVVIQTPTTVT 923
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = -1
Query: 271 EAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVTLPEQPSVTTTSL 92
E +T T+ P + TT+++ TP +V T E+ T+ P+ T+T
Sbjct: 940 ETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGT 999
Query: 91 FIVENHKKKTLT 56
V T+T
Sbjct: 1000 TTVVIQTPTTVT 1011
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = -1
Query: 271 EAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVTLPEQPSVTTTSL 92
E +T T+ P + TT+++ TP +V T E+ T+ P+ T+T
Sbjct: 1028 ETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGT 1087
Query: 91 FIVENHKKKTLT 56
V T+T
Sbjct: 1088 TTVVIQTPTTVT 1099
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 327 FAGLLFAFPWGFYADTRGRRKALL 398
F ++F FPW + + RG RK+++
Sbjct: 137 FILIVFPFPWRYRSSQRGLRKSII 160
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 150 DEAVELAGHGRYNYTLLGVCSIIVVAVAIDMFGYSVVVAAS 272
DE V + +GRY L+G+ S+ V V D+F + + +S
Sbjct: 441 DEIVGMVFYGRYIVLLMGLFSMYVGFVYNDLFSKPMSIFSS 481
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 3.1
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = +2
Query: 143 WLRRSGGISWAWPVQLHTVG 202
WL +S WP +H +G
Sbjct: 269 WLNEKSSLSAGWPANMHVIG 288
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 211 LHTPNSV*LYRPCPA-NSTASS*PHESVTLPEQPSVTTTSLFIVENHKKKTLTIVKLFN 38
L PN + +Y PCP+ NST S +TL Q S + + K+ TI+ L N
Sbjct: 404 LPLPNPLRMYLPCPSLNSTEVS----VITLAPQHSFLNIVINLNPALALKSYTIITLLN 458
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 334 PAKGADASKPVSLSPTPRS 278
P + + SKPVSL PTP S
Sbjct: 302 PGRLSSLSKPVSLPPTPSS 320
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +2
Query: 287 CRAQGDRFACIGAFCWIAFCFSLGLLRGYKRTKEGFTD 400
CR DR I CW A G++ GY K D
Sbjct: 261 CRVDLDREGPIHDVCWNADSKEFGIVYGYMPAKTAIFD 298
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 153 EAVELAGHGRYNYTLLGVCSIIVVAVAIDMFGYSVVVAASSCDLGVGLKETGL 311
+ +E+AGH G + V ID G+S+ + S LG +GL
Sbjct: 62 QVLEVAGHKAIVQVFEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGL 114
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 454 GSLCLPLSYLDAVFPRQVSHW 516
G + LP +LDA+F ++S W
Sbjct: 126 GRMHLPSQHLDAIFATRLSPW 146
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 159 VELAGHGRYNYTLLGVCSIIVVAVAI 236
+EL G G Y G+C++ VAI
Sbjct: 13 LELVGRGSYGAVYRGICNLTKETVAI 38
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = -3
Query: 308 TGLLEPYTEITARSGHYHAVPKHVYGHRNNDNTTHSQQCVVVPAMPS*FHR 156
T L P + T+ HA P H + ++ Q VP PS F R
Sbjct: 58 TSLFGPRKQTTSSPSFSHAAPLHPLSPPSFTHSQPQIQAQPVPRRPSLFDR 108
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 105 VTDGCSGKVTDSCGYDEAVELAGHG-RYNYT 194
VT CS + Y+ V LAG YNYT
Sbjct: 291 VTSNCSSITNEQWSYNVGVYLAGTAFLYNYT 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,867
Number of Sequences: 5004
Number of extensions: 47589
Number of successful extensions: 151
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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