Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5o08
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12) 35 0.037
SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7) 33 0.11
SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_11256| Best HMM Match : MFS_1 (HMM E-Value=1.7e-13) 32 0.26
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) 32 0.26
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 31 0.80
SB_9342| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_42686| Best HMM Match : Pkinase (HMM E-Value=0) 30 1.1
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_12874| Best HMM Match : Endotoxin_N (HMM E-Value=3.5) 29 3.2
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12) 29 3.2
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3) 29 3.2
SB_29301| Best HMM Match : MFS_1 (HMM E-Value=2.9e-05) 28 4.2
SB_19516| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_5549| Best HMM Match : PT (HMM E-Value=1.9) 28 4.2
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13) 28 5.6
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 27 7.4
SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_39545| Best HMM Match : TolA (HMM E-Value=0.12) 27 7.4
SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2) 27 7.4
SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5) 27 7.4
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_40201| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_33954| Best HMM Match : Ion_trans_2 (HMM E-Value=0.74) 27 9.8
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 27 9.8
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 27 9.8
>SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)
Length = 1020
Score = 35.1 bits (77), Expect = 0.037
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -1
Query: 334 PAKGADASKPVSLSP----TPRSQLEAATTTLYPNMSMATATTIILHTPNSV*LYRPCPA 167
PA +S +++SP T S + ++T +P S+ T TT I +P++ + +P P+
Sbjct: 293 PAPDLPSSVTMTISPQKTATKPSTFQPQSSTRHPLTSITTRTTPIKPSPSTTPI-KPSPS 351
Query: 166 NSTASS*PHESVTLPEQPSVTTT 98
+ P + T P +PS TT
Sbjct: 352 TTPIKPSPSTTSTTPIKPSPNTT 374
>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
Length = 608
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/80 (23%), Positives = 41/80 (51%)
Frame = +3
Query: 84 TMNKEVVVTDGCSGKVTDSCGYDEAVELAGHGRYNYTLLGVCSIIVVAVAIDMFGYSVVV 263
T + +++ +GK + + +AVE AG+G Y L + S VA A+++ S++V
Sbjct: 66 TAHNHQLMSRDITGKTSPTFTVSDAVESAGYGWYQLRLGIISSFQRVADAMEITMLSILV 125
Query: 264 AASSCDLGVGLKETGLLASA 323
C+ + + + ++ +A
Sbjct: 126 PYVKCEWDLSIVQVAMITTA 145
>SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 32.3 bits (70), Expect = 0.26
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = -1
Query: 322 ADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*P 143
++ SKP++++ S T + P S +TAT+I T SV P +S+ S+
Sbjct: 314 SETSKPLTIASPQSSLTSVLTDSDLPTTSKSTATSIGQETSFSVLNISPIVPSSSTSTLL 373
Query: 142 HESVTLPEQPSVTTTSLF 89
SV P+ T T+++
Sbjct: 374 STSVAPTTGPTYTETNVY 391
>SB_11256| Best HMM Match : MFS_1 (HMM E-Value=1.7e-13)
Length = 506
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 282 LGVGLKETGLLASA-PFAGLLFAFPWGFYADTRGRRKALLI 401
+G+ +TG+L PF LL A WG AD GR + +L+
Sbjct: 64 MGMSATQTGVLIGLRPFVRLLAAPMWGIIADKTGRYRCILL 104
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 32.3 bits (70), Expect = 0.26
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = -1
Query: 379 PLVSA*KPQGKAKSN-PAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHT 203
P + KP S P K + ++ P+ SP+ S + + + +TT I +
Sbjct: 1259 PSTTPIKPSPSTTSTTPIKPSPSTNPIKPSPSTTSTTPIKPSPSTTPIKPSPSTTPIKPS 1318
Query: 202 PNSV*LYRPCPANSTASS*PHESVTLPEQPSVTTTSL 92
P++ + +P P+ + P + T P +PS +TT +
Sbjct: 1319 PSTTPI-KPSPSTTPIKPSPSTTSTTPIKPSPSTTPI 1354
>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
Length = 532
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 423 FAALSSLSMNWQFMFASKLFGCGFSTASFTLVITLLGEC 539
F ++ NW + S+ GCG+ST S T+VI C
Sbjct: 244 FRGCCRVNCNWYWSGWSRCTGCGYSTQSSTVVIRTAASC 282
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 31.1 bits (67), Expect = 0.60
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -1
Query: 316 ASKPVSLSPTPRSQLEAATTTLYPNMSMATATTII--LHTPNSV*LYRPCPANSTASS*P 143
++ P +PTP + A T P + T TT TP + L +P PA + + P
Sbjct: 46 STAPTQTTPTPTTPSPTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTKPTPATTPTPTKP 105
Query: 142 HESVTLPEQPSVT 104
+ P P+ T
Sbjct: 106 TPTAHTPTTPTPT 118
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/79 (24%), Positives = 31/79 (39%)
Frame = -1
Query: 328 KGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS 149
K + P PTP + + P + T TT TP+ + P +T
Sbjct: 17 KATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPTPAT--- 73
Query: 148 *PHESVTLPEQPSVTTTSL 92
P + P+ P+ TT++L
Sbjct: 74 -PTPTTPTPKTPTPTTSTL 91
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 30.7 bits (66), Expect = 0.80
Identities = 26/82 (31%), Positives = 38/82 (46%)
Frame = -1
Query: 346 AKSNPAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTPNSV*LYRPCPA 167
A S+P GA ++ +SL+ TP A T+TL + T T + TP +V P P
Sbjct: 777 AGSSPISGASTTQ-LSLNSTP-VPTTAVTSTLIATLQSPTPQTTTVATPRTVISALPSP- 833
Query: 166 NSTASS*PHESVTLPEQPSVTT 101
+ P + V P S+TT
Sbjct: 834 TVVPTVPPAKPVPTPVVSSLTT 855
>SB_9342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 30.7 bits (66), Expect = 0.80
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 102 VVTDGCSGKVTDSCGYDEAVELAGH-GRYNYTLLGVCSIIVVAVAIDMFGYSVVVAASSC 278
++ DG G VT + G V +A + G + ++G+ ++ V VA+ G +V +
Sbjct: 41 IIDDGL-GVVTAAFGVAVTVFMAVNIGVLDTGVVGILELLTVCVAVAALGAAVTTLGITA 99
Query: 279 DLGVGLKETGLLASA 323
GVGL +TG + SA
Sbjct: 100 --GVGLVDTGGMGSA 112
>SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 759
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 435 LKPQTGSRTTWRSVKPSFVLLYPRRSPREKQKAI 334
LKP T SRT SVKP V +Y P+E K +
Sbjct: 155 LKPNTASRT---SVKPRIVSVYRNGKPKESAKKV 185
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.9 bits (64), Expect = 1.4
Identities = 30/120 (25%), Positives = 52/120 (43%)
Frame = -1
Query: 457 CQFIDRLLKAANRKPNDVEISKAFLRPLVSA*KPQGKAKSNPAKGADASKPVSLSPTPRS 278
CQF+ N+ PN ++ + + P +S K + P + TP +
Sbjct: 1854 CQFLYGYNMPENKPPNGLK-QRVPVSP-ISGSKSSTRTIKEPLP-LKKRHLKTFQDTPVT 1910
Query: 277 QLEAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVTLPEQPSVTTT 98
+ + T++L +S +TA T+ H N CP++ SS P+ S + PSV T+
Sbjct: 1911 DMCSTTSSLASTISFSTAPTVN-HVSNRP---SDCPSSELLSSPPNISTLVITAPSVITS 1966
>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 733
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 204 VCSII-VVAVAIDMFGYSVVVAASSCDLGVGLKETGLLASAPFAGLLFAFPWGFYADTR 377
V SI+ ++ + ID F VV DL G T + F G+L+ PW + A R
Sbjct: 119 VVSILSMICITIDRF--CAVVLPMKRDLITGKTRTATIILTWFLGILYTAPWFYVAKIR 175
>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -1
Query: 316 ASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS 149
AS PV + T S +E T P + A T + TP + L P STA++
Sbjct: 202 ASSPVDTTLTASSPVETTPTASPPVKTTPLAATPVYATPTAPELTTPLDTTSTATT 257
>SB_12874| Best HMM Match : Endotoxin_N (HMM E-Value=3.5)
Length = 200
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 372 TRGRRKALLISTSFGFLFAALSSLSMNWQFMFASKL 479
TR RKAL + + G A ++ L+ NW+ +F+ ++
Sbjct: 67 TRNWRKALWVCLTLGSAAALVTQLTENWETLFSYEI 102
>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
Length = 575
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/84 (27%), Positives = 33/84 (39%)
Frame = -1
Query: 307 PVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVT 128
P +P P ++ A TT ATTI P +V P +TA + P +
Sbjct: 1 PPVTTPVPTTESTAVPTTAPTTEQTTVATTIPTTIPTTV----PTTEPTTAPTTPEPTTL 56
Query: 127 LPEQPSVTTTSLFIVENHKKKTLT 56
P P T L +E K++ T
Sbjct: 57 EPTDPPTTERPL-TMEEKKEQAFT 79
>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
Length = 312
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 406 VEISKAFLRPLVSA*KPQGKAKSNPAKGADASKPVSLSPTPRSQLEAATTTLYP 245
V+ + AF + P K S+ + + ++ V SP P ++ E T T YP
Sbjct: 63 VQTTPAFTTSPATILPPTAKTTSSTSSTSKPTEDVGTSPQPSTENETHTPTTYP 116
>SB_29301| Best HMM Match : MFS_1 (HMM E-Value=2.9e-05)
Length = 662
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 282 LGVGLKETG-LLASAPFAGLLFAFPWGFYADTRGRRKALLISTSFGFLFA 428
L + +E+G LL PF +L + WG D + K +L+ + FG + A
Sbjct: 78 LWLNARESGILLGIRPFIKMLCSPLWGVITDVCQKPKVILLLSIFGSIIA 127
>SB_19516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = -1
Query: 295 SPTPRSQLEAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVTLPEQ 116
+P P + TT+ + TT+ P ++ P +TA + P + P
Sbjct: 153 TPEPATTCAPVPTTIPTTATTTEPTTVPTTIPTTIPTTLPTTEPTTAPTTPEPTTLEPTD 212
Query: 115 PSVTTTSL 92
P T T+L
Sbjct: 213 PPTTVTTL 220
>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
Length = 282
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = -2
Query: 471 RQT*TANSLTDYLK--PQTGSRTTWRSVKPSFVLLYPRRSPREKQKAIQQKAPMQANRSP 298
R+T SL LK P+T +T+ + + + P+ SP++ ++ ++++A QA R
Sbjct: 65 RKTSRKTSLKRSLKTNPKTSPKTSPKISLKTSLKKSPKISPKQARRQVERQAGRQAGRQV 124
Query: 297 *ALHRDHS*KRPLPR 253
L D ++P R
Sbjct: 125 RRLPEDRPEEKPEDR 139
>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
Length = 1027
Score = 27.9 bits (59), Expect = 5.6
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Frame = -1
Query: 304 VSLSPTPRSQLEAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHES--- 134
++L+P P L T T P+ ++ T T I T ++ P P+ + + P S
Sbjct: 335 ITLTPIPSRTL--LTLTPIPSRTLLTLTPIPSRTLLTL---NPIPSRNLLTLTPIPSRNL 389
Query: 133 VTLPEQPSVTTTSLFIVENHKKKTLTIVKLFNILTHC 23
+TL PS T +L + + TLT + +LT C
Sbjct: 390 LTLTPIPSRTLLTLTPIPSRNLITLTSIPSRTLLTQC 426
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 415 PNDVEISKAFLRP---LVSA*KPQGKAKSNPAKGADASKPVS 299
PN+V+ + +P L+ K QGK K+NP A A+K ++
Sbjct: 120 PNNVKKTIINTKPALALIKEAKKQGKGKNNPRASAKAAKSIA 161
>SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 415 PNDVEISKAFLRP---LVSA*KPQGKAKSNPAKGADASKPVS 299
PN+V+ + +P L+ K QGK K+NP A A+K ++
Sbjct: 171 PNNVKKTIINTKPALALIKEAKKQGKGKNNPRASAKAAKSIA 212
>SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)
Length = 1189
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 429 PQTGSRTTWRSVKPSFVLLYPRRSPREKQK 340
PQ G +W + PS+ +YP PR K
Sbjct: 362 PQKGETRSWELLLPSYKQVYPELYPRNLLK 391
>SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2)
Length = 1106
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 415 PNDVEISKAFLRP---LVSA*KPQGKAKSNPAKGADASKPVS 299
PN+V+ + +P L+ K QGK K+NP A A+K ++
Sbjct: 120 PNNVKKTIINTKPALALIKEAKKQGKGKNNPRASAKAAKSIA 161
>SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)
Length = 563
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3
Query: 309 LLASAPFAGLLFAFPWGFYADTRGRRKALLISTSFGFLFAAL-----SSLSMNWQFMFAS 473
++ S GLL F D GR+K I+ F F+F AL S S F++ S
Sbjct: 460 VVMSGDLLGLLLCF---LTIDRLGRKKVQAIAFFFNFVFLALLFICTESRSSTTFFLYGS 516
Query: 474 KLF 482
+LF
Sbjct: 517 RLF 519
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 27.1 bits (57), Expect = 9.8
Identities = 24/92 (26%), Positives = 33/92 (35%)
Frame = -1
Query: 376 LVSA*KPQGKAKSNPAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTPN 197
LV KP+ A SN K + P + SP S + + + T I +PN
Sbjct: 60 LVIKPKPKNPAASNAPKEGNKPFPATGSPGSASPPKTNGPDVGTQQPSPASPTSIKQSPN 119
Query: 196 SV*LYRPCPANSTASS*PHESVTLPEQPSVTT 101
S P T S+ TLP + T
Sbjct: 120 SSSSTGQTPTEKTDSTPKSSGSTLPTSSTPAT 151
>SB_40201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 379 PLVSA*KPQGKAKSNPAKGADASKPVSLSPTPRSQLEAATTT 254
P+ S +P+G+A N +PV P PRS A T+T
Sbjct: 7 PVASRPRPRGRASGNFTVNIPDDEPVRSQPRPRS-TPAQTST 47
>SB_33954| Best HMM Match : Ion_trans_2 (HMM E-Value=0.74)
Length = 330
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 144 GYDEAVELAGHGRYNYTLLGVCSIIVVAVAIDMFG 248
GY + HGR+ TL +++VA+ + + G
Sbjct: 5 GYGDVTPKTPHGRFIGTLCACIGVLIVALPVSVIG 39
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -1
Query: 268 AATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVTLPEQPSVTTTS 95
A+TTT P ++A TT++ T + L P +++AS+ ES PE +V T+
Sbjct: 1210 ASTTTGAPETTVAPETTVVPETTPA--LETTAPESTSAST---ESTVAPETTAVPETT 1262
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Frame = -1
Query: 265 ATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVT------LPEQPSVT 104
ATTT+ P+ + T++ + N+ P P +T+S +E++T + P+ T
Sbjct: 216 ATTTISPSPNGTTSSVYVTIVVNTTTSISPSPNRTTSSM--YETITVNTTTSISPSPNET 273
Query: 103 TTSLFI 86
T+S+++
Sbjct: 274 TSSMYV 279
Score = 27.1 bits (57), Expect = 9.8
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Frame = -1
Query: 379 PLVSA*KPQGKAKS---NPAKGADASKPVSLSPTPRSQLEA----ATTTLYPNMSMATAT 221
P++S P G S A A S +S + T S E AT T+YP+ + T++
Sbjct: 637 PIISP-SPNGTTSSVYETIAVNATPSISLSTNETASSPYETIAVNATPTIYPSPNRTTSS 695
Query: 220 TIILHTPNSV*LYRPCPANSTASS*PHESVTLPEQPSVT 104
NS P P N T SS +E++ + P+++
Sbjct: 696 MYETIAVNSTPSISPSP-NGTTSS-VYETIAVNATPTIS 732
>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 1242
Score = 27.1 bits (57), Expect = 9.8
Identities = 22/79 (27%), Positives = 29/79 (36%)
Frame = -1
Query: 286 PRSQLEAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVTLPEQPSV 107
P+S T LY M LH ++ LY P P T PH +TL
Sbjct: 253 PKSPHPMGTLRLYSPHPMQITDHKPLHPMGTLDLYSPYPMQITDHKSPHSVLTLDRCSPR 312
Query: 106 TTTSLFIVENHKKKTLTIV 50
+L + K TL +V
Sbjct: 313 IMLTLCLDCPRPKATLPLV 331
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,831,597
Number of Sequences: 59808
Number of extensions: 395935
Number of successful extensions: 1039
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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