Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5o08
(541 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13050.1 68416.m01626 transporter-related low similarity to a... 58 4e-09
At5g13750.1 68418.m01600 transporter-related 34 0.070
At5g13740.1 68418.m01599 sugar transporter family protein contai... 34 0.070
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 33 0.12
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 33 0.12
At5g13750.2 68418.m01601 transporter-related 32 0.28
At5g26340.1 68418.m03148 hexose transporter, putative strong sim... 30 0.86
At3g43790.3 68416.m04680 transporter-related low similarity to S... 30 0.86
At3g43790.2 68416.m04679 transporter-related low similarity to S... 30 0.86
At3g43790.1 68416.m04678 transporter-related low similarity to S... 30 0.86
At1g77210.1 68414.m08993 sugar transporter, putative similar to ... 30 0.86
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 30 1.1
At5g23270.1 68418.m02723 sugar transporter, putative similar to ... 28 4.6
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 28 4.6
At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 27 8.0
At4g00350.1 68417.m00046 MATE efflux family protein similar to r... 27 8.0
>At3g13050.1 68416.m01626 transporter-related low similarity to
apical organic cation transporter [Sus scrofa]
GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
{Rattus norvegicus}; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 500
Score = 58.0 bits (134), Expect = 4e-09
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Frame = +3
Query: 150 DEAVELAGHGRYNYTLLGVCSIIVVAVAIDMFGYSVVVAASSCDLGVGLKETGLLASAPF 329
DEA+ G G++ +L + VA A++M S V A + ++ L+ S F
Sbjct: 11 DEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITSVVF 70
Query: 330 AGLLF-AFPWGFYADTRGRRKALLISTSFGFLFAALSSLSMNWQFMFASK-LFGCG 491
AG+L A+ WG +D GRRK +I+ F+ LS+ S N+ ++ + L G G
Sbjct: 71 AGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLG 126
>At5g13750.1 68418.m01600 transporter-related
Length = 478
Score = 33.9 bits (74), Expect = 0.070
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Frame = +3
Query: 213 IIVVAVAIDMFGYSVVVAASSCDLGVGLKETGLLASAPFAGLLF----AFP---WGFYAD 371
IIV+ A+ + + D + KE + A F G F AF WG AD
Sbjct: 43 IIVLCTALPISSLFPFLYFMIDDFNIAKKEEDIGFYAGFVGCSFMLGRAFTSVAWGLVAD 102
Query: 372 TRGRRKALLISTSFGFLFAALSSLSMNW 455
GR+ +LI T+ +F L LS+N+
Sbjct: 103 RYGRKPVILIGTASVVVFNTLFGLSLNF 130
>At5g13740.1 68418.m01599 sugar transporter family protein contains
Pfam profile PF00083: major facilitator superfamily
protein
Length = 486
Score = 33.9 bits (74), Expect = 0.070
Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Frame = +3
Query: 111 DGCSGKVTDSCGYDEAVELAGHGRYNYTLLGVCSIIVVAVAIDMFGYSVVVAASSCDLGV 290
DGC G C ++ +L G Y Y L IIV++ ++ + + D GV
Sbjct: 17 DGCPG-----CKVEQMKQLR-RG-YPYLELSFVWIIVLSTSLPISSLYPFLYYMIEDFGV 69
Query: 291 GLKETGLLASAPFAGLLFAFP-------WGFYADTRGRRKALLISTSFGFLFAALSSLSM 449
E + A F G F WG AD GR+ +L+ T +F AL LS
Sbjct: 70 AKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIFNALFGLSS 129
Query: 450 N-WQFMFASKLFG 485
N W + L G
Sbjct: 130 NFWMAIGTRFLLG 142
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 33.1 bits (72), Expect = 0.12
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Frame = -1
Query: 346 AKSNPAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTII--LHTPNSV*LYRPC 173
+K N A GA++ PVSL+ TP A+T ++ N ++ T + + + + + +
Sbjct: 195 SKENVACGANSPAPVSLTETPNRTGIASTISVINNGLISKPLTPVGTMSSTSPLPVVNQL 254
Query: 172 PANSTASS*PHESVT---LPEQPSVT 104
P N+T+++ P +T + + P+VT
Sbjct: 255 PVNATSNASPSTPITASLVAQAPTVT 280
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 33.1 bits (72), Expect = 0.12
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Frame = -1
Query: 346 AKSNPAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTII--LHTPNSV*LYRPC 173
+K N A GA++ PVSL+ TP A+T ++ N ++ T + + + + + +
Sbjct: 456 SKENVACGANSPAPVSLTETPNRTGIASTISVINNGLISKPLTPVGTMSSTSPLPVVNQL 515
Query: 172 PANSTASS*PHESVT---LPEQPSVT 104
P N+T+++ P +T + + P+VT
Sbjct: 516 PVNATSNASPSTPITASLVAQAPTVT 541
>At5g13750.2 68418.m01601 transporter-related
Length = 392
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 354 WGFYADTRGRRKALLISTSFGFLFAALSSLSMNW 455
WG AD GR+ +LI T+ +F L LS+N+
Sbjct: 11 WGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 44
>At5g26340.1 68418.m03148 hexose transporter, putative strong
similarity to hexose transporter, Lycopersicon
esculentum, GI:5734440; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 526
Score = 30.3 bits (65), Expect = 0.86
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 315 ASAPFAGLLFAFPWGFYADTRGRRKALLISTSFGFLFAALSSLSMNWQFMFASK-LFGCG 491
+S AGL F + T GRR +LI+ F + AL++ + + + A + L GCG
Sbjct: 88 SSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCG 147
Query: 492 FSTAS 506
A+
Sbjct: 148 VGFAN 152
>At3g43790.3 68416.m04680 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 30.3 bits (65), Expect = 0.86
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 354 WGFYADTRGRRKALLISTSFGFLFAALSSLSMN-WQFMFASKLFGC 488
WG AD GR+ +LI T +F L LS + W + L GC
Sbjct: 96 WGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISVRFLLGC 141
>At3g43790.2 68416.m04679 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 30.3 bits (65), Expect = 0.86
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 354 WGFYADTRGRRKALLISTSFGFLFAALSSLSMN-WQFMFASKLFGC 488
WG AD GR+ +LI T +F L LS + W + L GC
Sbjct: 96 WGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISVRFLLGC 141
>At3g43790.1 68416.m04678 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 478
Score = 30.3 bits (65), Expect = 0.86
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 354 WGFYADTRGRRKALLISTSFGFLFAALSSLSMN-WQFMFASKLFGC 488
WG AD GR+ +LI T +F L LS + W + L GC
Sbjct: 96 WGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISVRFLLGC 141
>At1g77210.1 68414.m08993 sugar transporter, putative similar to
monosaccharide transporter PaMst-1 [Picea abies]
GI:2258137, sugar carrier protein GI:169735 from
[Ricinus communis], glucose transporter [Saccharum
hybrid cultivar H65-7052] GI:347855; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 504
Score = 30.3 bits (65), Expect = 0.86
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +3
Query: 315 ASAPFAGLLFAFPWGFYADTRGRRKALLISTSFGFLFAALSSLSMNWQFMFASKLF---G 485
+S FAGL+ F + GRR ++L+ + FL +++ + N + ++F G
Sbjct: 90 SSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAAAKNILMLILGRIFLGIG 149
Query: 486 CGFSTASFTLVIT 524
GF + L ++
Sbjct: 150 IGFGNQAVPLYLS 162
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 352 GKAKSNPAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTPNS 194
G A + A +S+P + SP L ++T+T P S AT T L P+S
Sbjct: 466 GFAVPKTSTPASSSQPQTTSPAFSFSLPSSTSTTAPATSSATTTQTTLVVPSS 518
>At5g23270.1 68418.m02723 sugar transporter, putative similar to
sugar transport protein [Arabidopsis thaliana] GI:16524,
sugar transporter [Medicago truncatula] GI:1353516;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 514
Score = 27.9 bits (59), Expect = 4.6
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = +3
Query: 309 LLASAPFAGLLFAFPWGFYADTRGR---RKALLISTSFGFLFAAL-SSLSMNWQFMFASK 476
L S+ + LFA F A T R RK ++ S FL AL + L++N + + +
Sbjct: 86 LFTSSLYLAALFA---SFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAINLEMLIIGR 142
Query: 477 LF---GCGFSTASFTLVIT 524
LF G GF+ S L ++
Sbjct: 143 LFLGVGVGFANQSVPLYLS 161
>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
protein
Length = 660
Score = 27.9 bits (59), Expect = 4.6
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Frame = -1
Query: 382 RPLVSA*K--PQGKAKSNPAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIIL 209
RP V+A + P + P P+S S + +T L P S+ TA L
Sbjct: 349 RPSVTAAEATPPNLSAPLPHCNTPQPSPISQQAAVESNTQMQSTAL-PRPSV-TAEARPL 406
Query: 208 HTPNS-V*LYRPCPANSTASS*PHESVTLPEQPSVTTTSLFIVENH 74
H P+S RP P + A S + + T +PS+T + + + H
Sbjct: 407 HQPHSNTSQPRPIPQQALAQSNTNITSTALPRPSITAEARLLHQPH 452
>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
Sex-lethal interactor [Drosophila melanogaster]
GI:6049274; contains Pfam profile PF04801: Sin-like
protein conserved region
Length = 689
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 352 GKAKSNPAKGADASKPVSLSPTPRSQLEAATTT 254
GK+K P A KPV P P+SQ E+ + T
Sbjct: 24 GKSKPKPKPEPTADKPV--QPPPQSQTESVSKT 54
>At4g00350.1 68417.m00046 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554
Uncharacterized membrane protein family
Length = 542
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 311 ACIGAFCWIAFCFSLGLLRGYK 376
A I FC+ AF LG L GYK
Sbjct: 463 AYINLFCYYAFGLPLGFLLGYK 484
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,236,338
Number of Sequences: 28952
Number of extensions: 267872
Number of successful extensions: 832
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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