Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5o07
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   2.3  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    27   3.1  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   4.1  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   4.1  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   9.5  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   9.5  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -3

Query: 635 VGHQIPLESFAAGSVRAY*WLNTIGILFA--EFKVGIGVRIPN-FEVELVALPQWLEY 471
           VG Q+PL S AA S+R Y        +FA  E+     + IPN F   + A   W+ Y
Sbjct: 250 VGEQLPLPSSAAASLRGY-------SVFAPGEYTYNFDLAIPNCFPESVEAKMGWVRY 300


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 486 WESNKLYFKIWNADSNSYLEFGEKDANGIQPLIGSD 593
           W   + +  +WN  +  Y+ FG+++ + IQ  +  D
Sbjct: 245 WIPIENFTSLWNTGAPKYISFGDENNSDIQTAVDYD 280


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 154 LYLAIMTTPHLLLNGYIQTTSANFKKLFR 240
           LYL+   T HL  +G I+    N+K LFR
Sbjct: 54  LYLSEFGTKHLRRHGRIEKKRRNWKGLFR 82


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 117 ISAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISK 242
           ++ E N++  D++   D D AAS+   L  +  +E  +T+SK
Sbjct: 256 VTKELNEEQLDALRKKDKDTAASVLAELFGSENTEEIDTVSK 297


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 162 GDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSY 284
           G YD+    A+ +     SELQ   +K++ D I+ L+   Y
Sbjct: 132 GRYDNPPDWAEVVKYFRGSELQNFFTKVVEDNIKALIKPQY 172


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 459 RSSWVFKPLWESNKLYFKI 515
           R SW   PLW   KLY K+
Sbjct: 308 RKSWETYPLWVQVKLYEKV 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,302
Number of Sequences: 5004
Number of extensions: 56338
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)