Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n21
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144...    28   8.2  
08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139...    28   8.2  
01_06_0066 - 26113761-26114683,26115031-26115106,26115204-261154...    28   8.2  

>08_01_0170 -
           1440908-1441072,1441539-1441581,1442155-1442619,
           1442714-1444149
          Length = 702

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +2

Query: 494 KTEYIVAFLLYINKTID*KIIPNFFFLLIETQLNI---FGASLLYLRYIYWMC 643
           +TE ++ + L+ N+++D  +  N  FL    ++NI    G++LLYL   +  C
Sbjct: 448 RTELLLVYELFPNRSLDVHLHGNGTFLTWPMRINIVHGLGSALLYLHEEWDQC 500


>08_01_0169 -
           1396657-1396710,1396801-1396843,1397440-1397904,
           1397999-1399395
          Length = 652

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +2

Query: 494 KTEYIVAFLLYINKTID*KIIPNFFFLLIETQLNI---FGASLLYLRYIYWMC 643
           +TE ++ + L+ N+++D  +  N  FL    ++NI    G++LLYL   +  C
Sbjct: 435 RTELLLVYELFPNRSLDVHLHGNGTFLTWPMRINIVHGLGSALLYLHEEWDQC 487


>01_06_0066 -
           26113761-26114683,26115031-26115106,26115204-26115401,
           26115829-26116014,26116292-26116447,26116486-26116731,
           26116832-26117149,26117235-26117292,26117472-26117837,
           26119300-26119604
          Length = 943

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 580 YQQKKKVWNNFLIYSFIYIQKKRYYIFRFMV*NI-ILSNTYNILNIFFSCNVI 425
           Y ++ ++W  FLI   +Y      + F F+      L+   N++N FF+ ++I
Sbjct: 97  YDRRYRIWETFLIVLVVYSAWVSPFEFGFIPKPTGALATADNVVNAFFAVDII 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,615,673
Number of Sequences: 37544
Number of extensions: 155661
Number of successful extensions: 311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)