Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n19
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    27   1.6  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   3.7  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    26   3.7  
SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ...    26   3.7  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   6.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.7  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    25   8.7  

>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 443 LDHLDTIQKYFRLIEKY*VGTVKAPYSRFLLTRFHYSRIKQK 318
           LD+    +KY  LIEKY +  ++ P+S      F Y   K K
Sbjct: 274 LDYKKLYEKYSALIEKYPIVFIEDPFSEEDWGAFSYMSSKTK 315


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 278 NKEILSREYRNWDAFV*YANSENV*EGSANKEL 376
           N  I S+ +++   FV  ANS N  +GS++K L
Sbjct: 331 NDSIPSQNFKSGKTFVSNANSSNSNDGSSSKSL 363


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 589 TCYRSSKIPMQWQHQSLGYRLRKTHSRLSKKKL 491
           TC +SS   ++W+  S+ Y  RK  S  +K  +
Sbjct: 14  TCLKSSSFKIRWRFFSVSYASRKLASEDNKPSI 46


>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 184

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 531 GYVKRTAAYRKKNLSPPLLLQREEI*HYCTGS 436
           GY+ +  +Y+  ++SP +++  E+  + C GS
Sbjct: 6   GYLFKLPSYKTSSISPEVIVDLEKFLNLCEGS 37


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 337 IRVLNKSVPIPIFAA*DFFVHRANRYIPTVKKDSNMYLDIQRNII 203
           I  L   V +   A+  FF  R +   P + K SNM +D+ R+++
Sbjct: 517 IENLQMVVGVRASASGSFFAIRNDYLPPPIYKPSNMLIDLLRSLL 561


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 94  IYVNYHYVITCFIIHLFFTEHTYRRLK 14
           ++++Y  V+   ++H  FT H Y  LK
Sbjct: 886 VFISYPCVMLNHLVHEKFTNHQYSALK 912


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 540 WVTGYVKRTAAYRKKNLSP 484
           WV GY K   A+R+ N  P
Sbjct: 227 WVIGYAKSPRAFRQANAHP 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,776
Number of Sequences: 5004
Number of extensions: 49627
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)