Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5n16
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 29 0.77
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 28 1.0
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 28 1.4
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 27 3.1
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 26 4.1
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 4.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.1
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 5.5
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 25 7.2
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 7.2
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 25 7.2
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 9.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 9.5
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 9.5
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 9.5
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 9.5
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 28.7 bits (61), Expect = 0.77
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 38 IKHALNMVNNQEKLLRYLKQIETLASDILVDKNEIIMLDKRRNKNREALRDL 193
I+ + N+ Q L + +ETLA +I +N +L KRR K REAL+ L
Sbjct: 364 IRISKNLEVKQRLLDQERHALETLAKNI---ENNRFILGKRRRKAREALQKL 412
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = +2
Query: 23 IRTKVIKHALNMVNNQEKLLRYLKQIETLASDILVDKNEIIMLDKRRNKNREALRDLTKS 202
I+T+V++ NM++ + +Y+K I L I +N + +D N +T+S
Sbjct: 390 IKTEVLR---NMISVDRHVSQYVKAIVELREQISELENRLAQIDLSSQSNGSDQDAVTQS 446
Query: 203 SQKKYWLTVGSILVKHKFEDTKTL 274
+ L L++ FE+T L
Sbjct: 447 FAHESKLAEARNLLRMTFEETLPL 470
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +2
Query: 245 KHKFEDTKTLLEADQKQLNIDINKLRSDLKIKVNTLRDLEMQPPVPGLMLVPLSQKETEG 424
K E L ++DQ NI N SDL +K R + PP L L + E G
Sbjct: 236 KEALESESLLSDSDQSMTNISSNSTVSDLNLKTLKKRLRGVLPP-SFLTLQEKKKLENRG 294
Query: 425 LTK 433
+ K
Sbjct: 295 VKK 297
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 191 LTKSSQKKYWLTVGSILVKHKFE----DTKTLLEADQKQLNIDINKLRSDLKIKVN 346
L KS +K W+++ + +H+ E T ADQ Q+++D RS + K+N
Sbjct: 36 LMKSLRKSVWVSLCGLSCRHRMECLSRSTSQSSYADQNQVHLDSE--RSFFQYKLN 89
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Frame = +2
Query: 32 KVIKHALNMVNNQEKLLRYLKQIETLASDILVDKNEIIMLDKRRNKNREALRDL---TKS 202
K + AL N EKL ++IE L DI+ +N + + ++ + + DL K
Sbjct: 936 KEVSQALAEAN--EKLNARDEEIERLKVDIIGLQNASLNMQSLKDSDNRTISDLESKNKE 993
Query: 203 SQKK------YWLTVGSILVKHKFEDTKTLLEADQ 289
+KK YWL + L + +D + L + Q
Sbjct: 994 LEKKLKEADEYWLLIVEELESKRTKDKELLRQCGQ 1028
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +2
Query: 164 NKNREALRDLTKSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQLNIDINKLRSDLKIKV 343
+KNR+ L +L KS L E LE D L +NK +D +
Sbjct: 726 SKNRDLLSELEKSKSLNNSLAA--------LESKNKKLENDLNLLTEKLNKKNADTESFK 777
Query: 344 NTLRDLEM 367
NT+R+ E+
Sbjct: 778 NTIREAEL 785
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 4.1
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Frame = +2
Query: 38 IKHALNMVNNQEKLLRYLKQIETLASDILVDKNEIIMLDKRRNKNREALRD--LTKSSQK 211
+ H NN E+L Q + L S I + ++ML+K K EAL + +T+S +
Sbjct: 449 VSHNTYRQNNLEELKN---QNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRVTRSEME 505
Query: 212 KYWLTVGSILVKHKFEDTKTLLEADQKQLNIDINKLRSDLKI 337
+ + ++K+ D K LE ++L N+L ++ I
Sbjct: 506 E-----ATEILKNNSADLKAQLEKQPQELE---NRLLQEISI 539
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 251 KFEDTKTLLEADQKQLNIDINKLRSDLKIKVNTLRDLE 364
KFE+ + L+ ++ + + + L S+ + + L DLE
Sbjct: 692 KFEEAISSLQLEKSNIQLQLTSLTSERSLALEKLNDLE 729
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 311 NKLRSDLKIKVNTLRDLEMQPPVPGLMLVPLSQKETEGL 427
N+L S + L+D++ + + GL L+P ++E EGL
Sbjct: 348 NQLTSLSAAEKEFLKDMQEKEQLKGLRLLPEDKEEYEGL 386
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 65 NQEKLLRYLKQIETLASDILVDKNEIIMLDKRRN 166
N E + R +KQI T SDI D +II++D R+
Sbjct: 373 NDESVDRLMKQIVTFMSDI-SDNFKIIVVDAIRS 405
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 149 LDKRRNKNREALRDLTKSSQKKYWLTVGSILVKHK---FEDTKTLLEADQKQLNIDINKL 319
+D + R+A++ T + KY+ + HK FE +L+ K+ + D+ L
Sbjct: 373 MDTLEDSFRDAIQVETLTGDNKYYAEGHGLQDAHKGIIFESLPNVLQLQLKRFDYDM--L 430
Query: 320 RSDLKIKVNTLRDLEMQ 370
R D+ +K+N + ++
Sbjct: 431 R-DMMVKINDRHEFPLE 446
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +2
Query: 341 VNTLRDLEMQPPVPGLMLVPLSQKETEGLTKSN 439
V+T+ +++ P L+PL+Q +++ + +SN
Sbjct: 214 VHTINNMQSSPSPSSSFLLPLTQIDSQNVKRSN 246
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 71 EKLLRYLKQIETLASDILVDKNEIIMLDKRRNKNREALRD 190
EK + YL Q + + +N +K++NK++EAL D
Sbjct: 67 EKSVNYLLQKASSKAGAKEKQNTDSQKEKKQNKSKEALAD 106
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 9.5
Identities = 21/107 (19%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +2
Query: 53 NMVNNQEKLLRYLKQIETLASDILVDKNEIIMLDKRRNKNREALRDLTKSSQKKYWLTVG 232
N+ N+E + ++IETL +D+ + L+ + + A++ L S++
Sbjct: 1245 NLERNEEVITELREKIETLKTDLANFRLNKEQLESQLQTEKAAVKKLENSNE-------- 1296
Query: 233 SILVKHKFEDTKTLLEADQK-QLNIDINKLRSDLKIKVNTLRDLEMQ 370
++K + + LL + + D ++L+++L K N + +L +
Sbjct: 1297 ----EYKRHNQEILLSLNSSTSTSSDASRLKNELVSKENLIEELNQE 1339
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 414 SFWDRGTNIKPGTGGC-ISRSLNVLTLIFRSLLNLFMSIFN 295
SF D+G + G G + R + L LIF SLL L+++I N
Sbjct: 5 SFEDKGLISRSGFGSRHVRRVVKALALIF-SLLILYLTISN 44
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 257 EDTKTLLEADQKQLNIDINKLRSDLKIKVNTLRD 358
+D K L+E Q L+ +LRSDLK+K +T D
Sbjct: 254 KDLKDLVEEFQPILDKG-EELRSDLKLKDDTFND 286
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 25.0 bits (52), Expect = 9.5
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +2
Query: 170 NREALRDLTKSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQLNID-----INKLRSDLK 334
N++A K Q+K G + ++ D + L E + NID I K ++LK
Sbjct: 93 NKKAKNKKKKKKQQKKKKVTGKRDLDNQSSDNEKL-EGLESSKNIDDDIDEIEKAAAELK 151
Query: 335 IKVNTLRDLEMQPPVPGLMLVPLSQKETEGLTK 433
+K +E V +PL ++ E L K
Sbjct: 152 LKYREQDQVEHVAGVEESATIPLDKELDEKLNK 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,546
Number of Sequences: 5004
Number of extensions: 37560
Number of successful extensions: 121
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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