Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5n16
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0408 - 17798033-17798181,17798349-17798616,17798707-177987... 33 0.20
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 32 0.46
04_03_0981 - 21411073-21411318,21411692-21411802,21413236-21413352 31 0.61
02_03_0299 + 17439626-17439742,17441119-17441229,17441630-17441869 30 1.4
08_02_1312 + 26055372-26056056,26056935-26057187,26057277-260580... 30 1.9
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783... 30 1.9
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 29 3.2
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 29 3.2
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424... 28 7.5
06_03_0705 - 23707987-23708295,23708532-23708573,23709772-237099... 28 7.5
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 28 7.5
>07_03_0408 -
17798033-17798181,17798349-17798616,17798707-17798797,
17800458-17800585,17800760-17800891
Length = 255
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 71 EKLLRYLKQIETLASDILVDKNEIIMLDKRRNKNREALRDLTKSSQ 208
++L L IET A +L+ +++++ D+ RN NREAL L K ++
Sbjct: 95 KQLQEALVDIETDAEQLLLARHQLVENDRIRNGNREALTALRKRAK 140
>07_03_1692 - 28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 31.9 bits (69), Expect = 0.46
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Frame = +2
Query: 161 RNKNREALRDLTKSSQKKYWLT----VGSILVKHKFEDTKTLLEADQKQLN-IDINKLRS 325
R K R++ R+ ++S+K W+ GS L + + T + D + +DINK
Sbjct: 793 RKKQRQSEREEAEASKKIAWMNRDEPEGSSLSRSP-QTVDTTRDGDVTMFDKVDINKGHI 851
Query: 326 DLKIKVNTLRDLEM---QPPVPGLMLVPLSQKETEGLTKSN 439
DL +RD E QP V + L+ ++ + E K N
Sbjct: 852 DLNFHPTAVRDEERHGGQPRVSMVSLLEVANRPLENYMKQN 892
>04_03_0981 - 21411073-21411318,21411692-21411802,21413236-21413352
Length = 157
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 35 VIKHALNMVNNQEKLLRYLKQIETLASDIL--VDKNEIIMLDKRRNKNREALRDLTKSSQ 208
++ MV + L + L++ ET + +DKN I++D + K + ++++TK Q
Sbjct: 55 ILSEVRQMVQQMQALNQQLEEAETAIDEYFKPIDKNAKIIMDMQLEKEEKQIKEMTKVMQ 114
>02_03_0299 + 17439626-17439742,17441119-17441229,17441630-17441869
Length = 155
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 35 VIKHALNMVNNQEKLLRYLKQIETLASDIL--VDKNEIIMLDKRRNKNREALRDLTKSSQ 208
++ MV + L + L++ ET + +DKN I+ D + K + ++++TK Q
Sbjct: 55 ILSEVRQMVQQMQALNQQLEETETAIDEYFKPIDKNAKIITDMQPEKEEKQIKEMTKVMQ 114
>08_02_1312 + 26055372-26056056,26056935-26057187,26057277-26058081,
26058828-26058952,26059081-26059165,26059473-26059626,
26059724-26059761,26059842-26060109,26060257-26060380,
26060508-26060868,26061904-26062272,26062528-26062609,
26063042-26063193
Length = 1166
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +2
Query: 260 DTKTLLEADQKQLNIDINKLRSDLKIKVNTLRDLEMQPPVPGLMLVPLSQKETEGLTKSN 439
DTK L+ + K+ + RS I++N+ DL++ P + ++ P KET T+
Sbjct: 1094 DTKYSLQVEYKESYFESFPFRSCCLIQLNSPSDLQLVPEMDAVL--PTQLKET---TQKV 1148
Query: 440 LFSL*WK 460
L L WK
Sbjct: 1149 LVELRWK 1155
>06_01_1006 +
7836366-7836460,7836568-7836626,7836877-7836961,
7837349-7837496,7837774-7837986,7838403-7838537,
7838659-7838790,7838884-7839099,7839212-7839336,
7839787-7839844,7839977-7840087
Length = 458
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +2
Query: 74 KLLRYLKQIETLASDILVDKNEIIMLDKRRNKNREALRDLTKSSQKKYWLTVGSILV 244
+LL + + I A +LVD E++ + K + R A K + +K W +V +++
Sbjct: 345 RLLEHEELIYGSAEQVLVDAEEVMYIVKELWRGRSARDQNLKDTGRKMWRSVNELML 401
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +2
Query: 149 LDKRRNKNREALRDLTKSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQLNIDINKLRSD 328
LD +++ + + +L K + L ++ V+H +D E + K L I++ L D
Sbjct: 184 LDSHKSELQNHIYEL-KQQLEAAKLEAATVAVQHDLQDKLQAAEKENKGLKIELLTLAKD 242
Query: 329 LKIKVNTLRDL 361
LK +++ RDL
Sbjct: 243 LK-RLSLERDL 252
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.1 bits (62), Expect = 3.2
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = +2
Query: 26 RTKVIKHALNMVNNQEKLLRYLKQIETLASDILVDKNEI---IMLDKRRNKNREALRDLT 196
+ K IK M + +KLL+ +Q+E A+ I K EI +M +K+R + D+
Sbjct: 593 KDKHIKDIDGMDEDLKKLLKEQRQLEDEAAKIRRKKEEITDTMMFEKKRQEETRRRVDIK 652
Query: 197 KSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQLNIDINKL 319
+ + + K KF D L + +L + + L
Sbjct: 653 RRMLETIYKEEDMESSKRKFVDQAAKLNDQRYELVLKLKDL 693
>10_08_0048 -
14441540-14441620,14442044-14442111,14442275-14442493,
14442506-14444508,14447541-14448410,14448533-14448576,
14449920-14450093
Length = 1152
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2
Query: 215 YWLTVGSILVKHKFEDTKTLLEADQKQLNIDINKLRSDL-KIKVNTLRDL---EMQPPV 379
+WL +V H FE+ LLE + + + + RS L + +N +R L E PPV
Sbjct: 494 HWLNQSYNVVNHAFEEKSKLLE-KEPLIFLSLALARSSLPNLSINVVRKLIKMEAYPPV 551
>06_03_0705 -
23707987-23708295,23708532-23708573,23709772-23709957,
23710112-23710222,23710337-23710408,23710499-23710747,
23711052-23711135,23711271-23711456,23711540-23711764
Length = 487
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +2
Query: 248 HKFEDTKTLLEADQKQLN-IDINKLRSDLKIKVNTLRDLEMQPPVPGLMLVPL-SQKETE 421
H E K+ ++A K+ ++ KLR L + N + +PP P + L L Q +
Sbjct: 258 HAQELEKSNMQAKSKETEEAELKKLRKSLNFRANPMPSFYKEPPPPKVELKKLYVQVHSR 317
Query: 422 GLTKSNLFSL*W 457
G + F+ W
Sbjct: 318 GRPPTPKFNSSW 329
>06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 27.9 bits (59), Expect = 7.5
Identities = 27/111 (24%), Positives = 44/111 (39%)
Frame = +2
Query: 116 DILVDKNEIIMLDKRRNKNREALRDLTKSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQ 295
DI ++ L K E +DLT + + I + KF+ + LE + +
Sbjct: 983 DISTLQHSSFSLSKLDKLPMERRKDLTDPCTPHNAIALEEIDILRKFKHPISELEKNDES 1042
Query: 296 LNIDINKLRSDLKIKVNTLRDLEMQPPVPGLMLVPLSQKETEGLTKSNLFS 448
+ I + R LKI M+P PG VP ++ T ++ FS
Sbjct: 1043 IKISVGLGRKRLKI-----MKYSMKPREPGKSTVPPGNFSSKKDTDADAFS 1088
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,239,332
Number of Sequences: 37544
Number of extensions: 186611
Number of successful extensions: 436
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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