Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5n16
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical pr... 37 0.014
AY643539-1|AAT66915.1| 566|Caenorhabditis elegans ERM-1C protein. 30 1.6
AB107270-2|BAC98357.1| 566|Caenorhabditis elegans ERM-1Asv prot... 30 1.6
Z81453-6|CAH04639.1| 283|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF125963-2|AAD14743.1| 463|Caenorhabditis elegans Hypothetical ... 29 2.9
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 28 5.0
AF039716-9|AAB96734.2| 548|Caenorhabditis elegans Hypothetical ... 28 5.0
Z81453-4|CAB03794.1| 283|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF003130-13|AAK73876.1| 220|Caenorhabditis elegans Hypothetical... 28 6.7
Z82256-6|CAB05117.2| 616|Caenorhabditis elegans Hypothetical pr... 27 8.8
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF000263-15|AAG00018.1| 416|Caenorhabditis elegans Hypothetical... 27 8.8
>Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical
protein R08D7.6c protein.
Length = 856
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = +2
Query: 149 LDKRRNKNREALRDLTKSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQLNIDINKLRSD 328
+D R N ++ L K+ + T GS+L +H F T LL+ Q++ +I N +D
Sbjct: 461 IDHRGTTNSFQMQSLQKTPLSVLYSTEGSVLERHHFAQTIKLLQ--QEECSILENLPAAD 518
Query: 329 LKIKVNTLRDL 361
+ VNT+R++
Sbjct: 519 FRTIVNTIREV 529
>Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical
protein R08D7.6b protein.
Length = 734
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = +2
Query: 149 LDKRRNKNREALRDLTKSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQLNIDINKLRSD 328
+D R N ++ L K+ + T GS+L +H F T LL+ Q++ +I N +D
Sbjct: 464 IDHRGTTNSFQMQSLQKTPLSVLYSTEGSVLERHHFAQTIKLLQ--QEECSILENLPAAD 521
Query: 329 LKIKVNTLRDL 361
+ VNT+R++
Sbjct: 522 FRTIVNTIREV 532
>Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical
protein R08D7.6a protein.
Length = 859
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = +2
Query: 149 LDKRRNKNREALRDLTKSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQLNIDINKLRSD 328
+D R N ++ L K+ + T GS+L +H F T LL+ Q++ +I N +D
Sbjct: 464 IDHRGTTNSFQMQSLQKTPLSVLYSTEGSVLERHHFAQTIKLLQ--QEECSILENLPAAD 521
Query: 329 LKIKVNTLRDL 361
+ VNT+R++
Sbjct: 522 FRTIVNTIREV 532
>AY643539-1|AAT66915.1| 566|Caenorhabditis elegans ERM-1C protein.
Length = 566
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/97 (26%), Positives = 42/97 (43%)
Frame = +2
Query: 131 KNEIIMLDKRRNKNREALRDLTKSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQLNIDI 310
K + I + + + + RE R L + Q+K V + + + E + E Q+ D+
Sbjct: 297 KPDTIEVQQMKQQARED-RALKIAEQEKLTRIVQEMSAREEAEQRQRDAEKRMAQMQEDM 355
Query: 311 NKLRSDLKIKVNTLRDLEMQPPVPGLMLVPLSQKETE 421
+ R +L NT+ LE Q L L QKE E
Sbjct: 356 ERARLELAEAHNTIHSLEAQLKQLQLAKQALEQKEYE 392
>AB107270-2|BAC98357.1| 566|Caenorhabditis elegans ERM-1Asv
protein.
Length = 566
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/97 (26%), Positives = 42/97 (43%)
Frame = +2
Query: 131 KNEIIMLDKRRNKNREALRDLTKSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQLNIDI 310
K + I + + + + RE R L + Q+K V + + + E + E Q+ D+
Sbjct: 297 KPDTIEVQQMKQQARED-RALKIAEQEKLTRIVQEMSAREEAEQRQRDAEKRMAQMQEDM 355
Query: 311 NKLRSDLKIKVNTLRDLEMQPPVPGLMLVPLSQKETE 421
+ R +L NT+ LE Q L L QKE E
Sbjct: 356 ERARLELAEAHNTIHSLEAQLKQLQLAKQALEQKEYE 392
>Z81453-6|CAH04639.1| 283|Caenorhabditis elegans Hypothetical
protein B0250.10 protein.
Length = 283
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 158 VYLAL*FHFYQQEYQMQVFLFVLNTSIVFLDYL 60
+Y + FH Y+Q+ VFL ++ TS +F Y+
Sbjct: 110 IYFPIFFHIYRQKLPNFVFLLIILTSELFNQYM 142
>AF125963-2|AAD14743.1| 463|Caenorhabditis elegans Hypothetical
protein Y38A10A.2 protein.
Length = 463
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 20 KIRTKVIKHALNMVNNQEKLLRYLKQIETLASDILVDKNEII--MLDKRRNKNREALRDL 193
K++ H ++ +NQ +L+ +L+ + L S + KN++I +LD + R+ +R +
Sbjct: 241 KVKKLYSDHVFHLESNQNRLITHLEVFDLLTSFSRLSKNQVIVPVLDDFMDWKRKHVRGI 300
Query: 194 T 196
+
Sbjct: 301 S 301
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/91 (23%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +2
Query: 95 QIETLASDILVDKNEIIMLDKRRNKNREALRDLTKSSQKKYWLTVGSILVKHKF-EDTKT 271
+I T +I + ++I K + + LR T+ ++ + ++ ++ + + T
Sbjct: 122 KISTAEQNIRKLEPDVISAKKNLESSFQ-LRVQTREDKRSQMKILSNLEAENSYIKRLTT 180
Query: 272 LLEADQKQLNIDINKLRSDLKIKVNTLRDLE 364
E ++ +++ +I++LRSD+K +V+ LRD E
Sbjct: 181 DCEEEKSRVHSEISRLRSDIK-RVHALRDKE 210
>AF039716-9|AAB96734.2| 548|Caenorhabditis elegans Hypothetical
protein W03G9.7 protein.
Length = 548
Score = 28.3 bits (60), Expect = 5.0
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Frame = +2
Query: 14 KLKIRTKVIKHALNMVNNQEKLLR--YLKQIE--TLASDIL---VDKNEIIMLDKRRNKN 172
KLK+ V++ +N+ +L R LK+ E T+ +D L V++ E ++ + ++
Sbjct: 70 KLKLTEGVVQDYINIEKAINRLERKNVLKKFESQTIYADNLKNTVEQLEAVLKELKKQTE 129
Query: 173 REA--LRDLTKSSQKKYWLTVGS-----ILVKHKFEDTKTLLEADQKQLNI 304
RE L+++ + S + Y G + K ++ED E QK+LNI
Sbjct: 130 REKTDLKNIEQPSVRDYLKQQGQWDDRYLKEKAEYEDAMVRQETVQKELNI 180
>Z81453-4|CAB03794.1| 283|Caenorhabditis elegans Hypothetical
protein B0250.6 protein.
Length = 283
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 158 VYLAL*FHFYQQEYQMQVFLFVLNTSIVFLDYL 60
+Y + FH Y+Q+ VFL ++ +S +F Y+
Sbjct: 110 IYFPIFFHIYRQKLPNFVFLLIILSSELFNQYM 142
>AF003130-13|AAK73876.1| 220|Caenorhabditis elegans Hypothetical
protein F55A12.10 protein.
Length = 220
Score = 27.9 bits (59), Expect = 6.7
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Frame = +2
Query: 20 KIRTKVIKHALNMVNNQEKLLRYLKQIET-----LASDILVDKNEIIMLDKRRNKNREAL 184
KI TK +K ++ N +K+ + + T LA I K + + K NK
Sbjct: 44 KIPTKTLKMDASLPKNVKKMFGDVGVMSTDIHKRLARVIGFQKIQKSIQLKMENKKSVMR 103
Query: 185 RDLTKSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQLNIDINKLRSDLKIKVNTLRDLE 364
++ TK +KK + FE+ D ++ N + L S L++KV + RD++
Sbjct: 104 KEQTKKVEKKTEEMHCQLSKLTSFEENNRKKLEDIERENEKLRNLISALELKVASSRDID 163
>Z82256-6|CAB05117.2| 616|Caenorhabditis elegans Hypothetical
protein B0513.5 protein.
Length = 616
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = +2
Query: 17 LKIRTKVIKHAL-NMVNNQEKLLRYLKQIETLASDILVDKNEIIMLDKRRNKNREALRDL 193
L I+T ++ + N+ N +E+ R + + ++ ++K IM+D + + A+ +
Sbjct: 345 LNIKTGSLEPLIQNLSNEEEQEFRNMVRRTLDVAEYAIEKGVRIMVDAEQTYLQPAISKI 404
Query: 194 TKSSQKKYWLTVGSILVKHK--FEDTKTLLEADQK 292
T KKY G+I ++ + T +EAD +
Sbjct: 405 TIEMMKKYNKGRGNIFNTYQAYLKGTLQNMEADMQ 439
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 27.5 bits (58), Expect = 8.8
Identities = 25/111 (22%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Frame = +2
Query: 65 NQEKLLRYLKQIETLASDILVDKNEIIMLDKRRNKNREALRDLTKSSQKKYWL--TVGSI 238
++EK+ + +KQ E + SD VDKN +++ K ++ +T+++ + W+
Sbjct: 1741 HEEKVTKVVKQTEVITSD--VDKN----YQEQQQKQQQVTSTVTETTSGEGWVQHQHQDF 1794
Query: 239 LVKHKFEDTKTLLEADQKQLNIDINKLRSDLKIKVNTLR---DLEMQPPVP 382
+ HK T L+ +++Q NI+ + + + T + DL + +P
Sbjct: 1795 VEPHKSTITVKKLDIEEQQ-NINQQRFAQPEQKHITTEKIEEDLHRESRIP 1844
>AF000263-15|AAG00018.1| 416|Caenorhabditis elegans Hypothetical
protein T08B2.11 protein.
Length = 416
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 167 KNREAL-RDLTKSSQKKYWLTVGSILVKHKFEDTKTLLEADQKQLNIDINKLRSDLKIKV 343
KN++ L +DL K K + S + K +D + + + QLN+ LR + K
Sbjct: 155 KNKQKLNKDLAKHFFKHIQESHKS---RKKADDRRIEVMPESSQLNVSARSLRKKTQKKP 211
Query: 344 NTLRDLEMQPP 376
T+ DLE+ P
Sbjct: 212 KTVLDLEIFKP 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,711,684
Number of Sequences: 27780
Number of extensions: 202677
Number of successful extensions: 619
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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