Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n15
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.10 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    31   0.18 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.31 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.72 
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    27   1.7  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   1.7  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    27   2.9  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   3.8  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   5.1  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   8.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
 Frame = -1

Query: 625  PPMAVPIP-PNEVAMP-SRPFSILSSSIPWSAKLEISFTCPALSLP---KLSSAESP-KL 464
            P +  P+P  N ++ P S P      S P S  +  S   P   +P   KLSS   P  L
Sbjct: 967  PSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPL 1026

Query: 463  PN---PESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPN 326
            P+   P    P+     P P S  P P+S    P + P +P P S  P+
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPS 1075



 Score = 29.9 bits (64), Expect = 0.31
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = -1

Query: 625  PPMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLS--SAESPKLPNPE 452
            P  A P+P   V +P  P    +  +P  +        P    P +   S+E+P +  P 
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPR 1253

Query: 451  SWCPNPES-WCPNPES 407
            S  P+P S   P+P S
Sbjct: 1254 SSVPSPHSNASPSPTS 1269


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -1

Query: 586 MPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNPESWCPNPESWCPNPES 407
           +P R FS+ S+S P    + +S   P    P  S   +    N +S+  +P+S   NP S
Sbjct: 250 VPRRQFSVSSASDPPQTPISMSPPIP----PTPSQFSAFMYQNQQSYL-SPQSHYENPLS 304

Query: 406 WCPNPESWCPN-PESCPKLPN 347
               P   CP+ P S   L N
Sbjct: 305 ISSRPSPCCPSTPSSAVTLSN 325


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 475 SPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPN 347
           +P  P P+S    P S  P P    P+P S  P P   P +P+
Sbjct: 127 APAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPS 169



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -1

Query: 502 SLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNP 323
           S P   + +S   P P S  P P    P+P S  P P    P P S P    P +   +P
Sbjct: 126 SAPAPPTPQSELRP-PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184

Query: 322 ES 317
            S
Sbjct: 185 PS 186


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 625  PPMAVPIPPNEVAMPSRPFSILSSSIPWSA 536
            PPM+VP PP+   MP+ P S     +P S+
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 558 DKIEKGLEGIATSLGGIGTAIG 623
           D +   LEGI  + GGIG AIG
Sbjct: 354 DSLLTRLEGIGNAFGGIGNAIG 375


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -1

Query: 622 PMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNPESWC 443
           P + P PP  + + S+P S  SS++P   K    F+  + S    ++++ P+  + ES  
Sbjct: 193 PYSSPFPPPRIVLGSKPVS--SSTLPSKPKSFQVFSDASSSRDSQNASDLPQAKSLESEA 250

Query: 442 PNP 434
             P
Sbjct: 251 NTP 253


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -1

Query: 520 FTCP--ALSLPKLSSA--ESPKLPNPESWCPNPESWCPNPESWCPNPESW 383
           +T P  A+ +P L  A  +S   P PE++  NP+ W PN  +   +P++W
Sbjct: 403 YTVPKDAMVIPTLYGALHDSKVYPEPETF--NPDRWAPNGLAE-QSPKNW 449


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = -1

Query: 523 SFTCPALSLPKLSS----AESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPK 356
           S  C A  +PK  S    +E     +PE       S C +P    P+  S CPN    PK
Sbjct: 259 SSNCSARRVPKFDSKGTVSEQSNSDSPELSADKVLSHC-SPIDARPSTPS-CPNASISPK 316

Query: 355 LPN 347
            PN
Sbjct: 317 TPN 319


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 122 YSFDFTASINIATAMREGLCYCKY 51
           Y+F+ TA       M+E LCY  Y
Sbjct: 198 YAFNRTADFETVREMKEKLCYVSY 221


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 472 PKLPNPESWCPNPESWCPNPESWCPNPESW 383
           P    PE W  +   + P+PE+    PE W
Sbjct: 281 PDAVKPEDWLEDEPLYIPDPEA--QKPEDW 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,255
Number of Sequences: 5004
Number of extensions: 40605
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)