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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n15
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    36   0.024
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    35   0.054
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    33   0.17 
AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein...    33   0.17 
Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    31   0.67 
U37429-11|AAA79352.1|  312|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   3.6  
Z69884-5|CAA93747.1|  423|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    28   4.7  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    28   6.2  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z74031-3|CAA98455.1|  245|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    27   8.2  
U28941-8|AAC71105.2|  470|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    27   8.2  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    27   8.2  

>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = -1

Query: 442 PNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNP 323
           P P   CP P    P P  +CP P  CP  P P   CP P
Sbjct: 48  PMPMPVCPPPP---PCPAQFCPPPPICPPPPPPPMPCPPP 84



 Score = 34.3 bits (75), Expect = 0.072
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -1

Query: 514 CPA-LSLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPES 338
           CP  +  P++  A    +P P   CP P    P P  +CP P   CP P   P +P P  
Sbjct: 30  CPTPMCQPRMPCAAPMPMPMPMPVCPPPP---PCPAQFCP-PPPICPPPPP-PPMPCPPP 84

Query: 337 WCPNPE-SC 314
             P P  SC
Sbjct: 85  PPPMPRPSC 93


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = -1

Query: 487 SSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESC--PKLPNPESWCPNP 323
           S    P  P P   C  P   CP P   CP P+ +CP P  C  P  P P   CP P
Sbjct: 24  SMGPPPCPPPPPPMCAPPPLPCPPPPI-CP-PQ-FCPPPPMCPPPPPPPPPPMCPPP 77


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
 Frame = -1

Query: 625 PPMAVPI---PPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALS-LPKLSSAESPKLPN 458
           P  A+P    P + + +  + F+ L S +P +  L      P  S +P++ +   P +P 
Sbjct: 287 PQTALPYQQKPQSLLNIQQQQFNTLPSQMPSTQTLPSLSENPGQSHIPRMMTMP-PNMPY 345

Query: 457 PESWCPNPESWCPNPESWCPNPESWCPN-PESCPKLP 350
           P +  P+P +W P   S+  + +S   N P   P++P
Sbjct: 346 PTATLPHPRTWAPQIPSYPNSMQSLEQNVPMYYPQMP 382


>Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical
           protein C33G3.1a protein.
          Length = 793

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
 Frame = -1

Query: 625 PPMAVPI---PPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALS-LPKLSSAESPKLPN 458
           P  A+P    P + + +  + F+ L S +P +  L      P  S +P++ +   P +P 
Sbjct: 193 PQTALPYQQKPQSLLNIQQQQFNTLPSQMPSTQTLPSLSENPGQSHIPRMMTMP-PNMPY 251

Query: 457 PESWCPNPESWCPNPESWCPNPESWCPN-PESCPKLP 350
           P +  P+P +W P   S+  + +S   N P   P++P
Sbjct: 252 PTATLPHPRTWAPQIPSYPNSMQSLEQNVPMYYPQMP 288


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
 Frame = -1

Query: 625 PPMAVPI---PPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALS-LPKLSSAESPKLPN 458
           P  A+P    P + + +  + F+ L S +P +  L      P  S +P++ +   P +P 
Sbjct: 287 PQTALPYQQKPQSLLNIQQQQFNTLPSQMPSTQTLPSLSENPGQSHIPRMMTMP-PNMPY 345

Query: 457 PESWCPNPESWCPNPESWCPNPESWCPN-PESCPKLP 350
           P +  P+P +W P   S+  + +S   N P   P++P
Sbjct: 346 PTATLPHPRTWAPQIPSYPNSMQSLEQNVPMYYPQMP 382


>AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein
           protein.
          Length = 793

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
 Frame = -1

Query: 625 PPMAVPI---PPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALS-LPKLSSAESPKLPN 458
           P  A+P    P + + +  + F+ L S +P +  L      P  S +P++ +   P +P 
Sbjct: 193 PQTALPYQQKPQSLLNIQQQQFNTLPSQMPSTQTLPSLSENPGQSHIPRMMTMP-PNMPY 251

Query: 457 PESWCPNPESWCPNPESWCPNPESWCPN-PESCPKLP 350
           P +  P+P +W P   S+  + +S   N P   P++P
Sbjct: 252 PTATLPHPRTWAPQIPSYPNSMQSLEQNVPMYYPQMP 288


>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = -1

Query: 436 PESWCPNPESWCPNPESWCPNP---ESCPKLPNPESWCPNP 323
           PE   P PE   P PE   P P   E  P++P P    P P
Sbjct: 517 PEDPNPIPEDTVPGPEDTTPGPAVTEEIPEVPEPTEEPPTP 557


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = -1

Query: 436 PESWCPNPESWCPNPESWCPNP---ESCPKLPNPESWCPNP 323
           PE   P PE   P PE   P P   E  P++P P    P P
Sbjct: 517 PEDPNPIPEDTVPGPEDTTPGPAVTEEIPEVPEPTEEPPTP 557


>U37429-11|AAA79352.1|  312|Caenorhabditis elegans Hypothetical
           protein F09E5.12 protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 484 SAESPKLPNPESWCPN-PESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPE 320
           +A SP L   ++  P  P    PN + W  +P  +  +P S P+ P P     NPE
Sbjct: 239 AARSPALARQQNDLPRRPIPLPPNRDHWTGHPTLYYNSPYSFPRRPRPND-RENPE 293


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -1

Query: 421 PNPESWC-PNPESWCPNPESCPKLPNPESWCPNP 323
           P P   C P P   CP P  CP  P P   CP P
Sbjct: 244 PPPSPVCMPPPPPPCPMPIPCPP-PPPACSCPPP 276


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
 Frame = -1

Query: 625 PPMAVPIPPNEVAMPSRPF-SILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNPES 449
           PP A P P + V  P+ P  S   +++P  A     +   A+  P       P  P P+ 
Sbjct: 67  PPPA-PYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPA-----PPPAPYPQH 120

Query: 448 WCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPES 338
             P P  +   P    P P    P P   P  P P S
Sbjct: 121 AVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAPHS 157


>Z69884-5|CAA93747.1|  423|Caenorhabditis elegans Hypothetical
           protein F31F6.7 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 72  FPHGSSDVDGSGEVEAVAGTLKK-GFGFG 155
           F HG SD+ G G+++A++ T KK G+G G
Sbjct: 68  FVHGVSDIAG-GKMQALSATYKKHGYGSG 95


>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 511 PALSLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESW 383
           P +  P++ S+    L NP +  P P S  PN  ++ PN ES+
Sbjct: 552 PRIPPPQIYSSPGQALFNPTNLYPTPPSSLPN--TYVPNQESF 592


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 511 PALSLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESW 383
           P +  P++ S+    L NP +  P P S  PN  ++ PN ES+
Sbjct: 552 PRIPPPQIYSSPGQALFNPTNLYPTPPSSLPN--TYVPNQESF 592


>U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical
           protein C04G6.4 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -1

Query: 625 PPMAVPIPPNEVA--MPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNPE 452
           PP  +P PP  ++  MP  P  +L  +I  ++ L+ + T       K +      +P P 
Sbjct: 10  PPFDMPPPPKPLSFEMPKPP--VLQPNI--ASLLQKTNTTGEDVKSKDAQPSVTPVP-PP 64

Query: 451 SWCPNPESWCPNPESWCPNPESWCP 377
           ++ P P  + P P+S  PNP    P
Sbjct: 65  TFNPVPNPFAPRPKSVSPNPHPDVP 89


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 481 AESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNP 323
           A +P    P+   P PE+  P PE+  P P    P   +    P PE+  P P
Sbjct: 111 AAAPVQETPQV-APAPETPAPAPETPAPAPVQETPQVVAPAPEPTPEAAAPVP 162



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
 Frame = -1

Query: 601 PNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNPESWCPNPESWC 422
           P  V +P  P  +   S P     +     P    P+++ A     P PE+  P P    
Sbjct: 86  PAPVPVPE-PAQLAPQSAPEPTP-DAPAAAPVQETPQVAPAPETPAPAPETPAPAPVQ-- 141

Query: 421 PNPESWCPNPESWCPNPESCPKLP-NPES 338
             P+   P PE   P PE+   +P +P+S
Sbjct: 142 ETPQVVAPAPE---PTPEAAAPVPADPQS 167


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
 Frame = -1

Query: 625  PPMAVPIPPNEVAMPSRPFS--ILSSSIPWSAKLE----ISFTCPALSLPKLS--SAESP 470
            P  A+PIP N    P  P    +     PW    E    +S   P    P L+  +   P
Sbjct: 961  PKKAIPIPANTQEAPPTPVKNPVKKWKPPWEDDDEPAEPVSAPEPEKKTPVLAKKAPAKP 1020

Query: 469  KLPNPESWCP---NPESWCPN-PESWCPNP-ESWCPNPESCPKLPNPESWCPNPE 320
            + P+P+   P    P+   P  P +   NP + W P  E   +   P S  P PE
Sbjct: 1021 RDPSPKKAAPVAAKPDPKIPEVPPTPVKNPVKKWKPPWEDDDEPSEPVS-APEPE 1074


>AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical
           protein Y66D12A.11 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -1

Query: 496 PKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNP 371
           P+  S  SP  P+P    PN      N + WC   E  CP P
Sbjct: 140 PRARSMTSPPPPHP----PNSFMSAENQKLWCKLYEQTCPPP 177


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 2/103 (1%)
 Frame = -1

Query: 625 PPMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNPESW 446
           PP   P+PP  +  P+  ++    + P    +E     P    P  +       P P  +
Sbjct: 42  PPQYAPLPPPPMPAPAPAYNPYPCANPPCIVVEPMPVAPPAPAPAYNPYPCATPPCPLPY 101

Query: 445 CPNPESWCPNPESWCPNPESW-CPNPESCPKLPNPESW-CPNP 323
            P P +  P P    P  E + C  P   P  P  E + C  P
Sbjct: 102 IPEPVAPVPAP---APVYEPYACAAPPCPPPTPVYEPYACAAP 141


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/59 (33%), Positives = 22/59 (37%)
 Frame = -1

Query: 496 PKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPE 320
           P + S ESP  P P     NPE     P S    P    P   S P    PE   P P+
Sbjct: 568 PSMPSGESPAQPEPSIPAVNPEPSPSQPSS--SGPIQTAPPSPSSPN-AIPEGPPPGPD 623


>Z74031-3|CAA98455.1|  245|Caenorhabditis elegans Hypothetical
           protein F32D8.3 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -1

Query: 460 NPESWCPNPESWCPNPESWCPNPESWCPNPESCPK 356
           NP+ +C   E  C     +  N    C  PE CP+
Sbjct: 80  NPDPYCSKCEPGCTCRNGFVRNSLKLCVLPEECPR 114


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = -1

Query: 511  PALSLPKLSSAESPKLPNPESWCP---NPESWCP-NPESWCPNPESWCPNPESCPKL--- 353
            P L+ P  S  +SP +P P +  P    P S  P  P ++   P S+ P   + P +   
Sbjct: 1205 PGLTTPMASIFQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGSFPPTTPTYPGMTPR 1264

Query: 352  PNPESWCPNP 323
            P P    P P
Sbjct: 1265 PGPNFGPPGP 1274


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = -1

Query: 511  PALSLPKLSSAESPKLPNPESWCP---NPESWCP-NPESWCPNPESWCPNPESCPKL--- 353
            P L+ P  S  +SP +P P +  P    P S  P  P ++   P S+ P   + P +   
Sbjct: 1205 PGLTTPMASIFQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGSFPPTTPTYPGMTPR 1264

Query: 352  PNPESWCPNP 323
            P P    P P
Sbjct: 1265 PGPNFGPPGP 1274


>U28941-8|AAC71105.2|  470|Caenorhabditis elegans Hypothetical
           protein F31D5.2 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 15  KMALKITCSILAVLAVAQAFPHGSSDVDGSGEVEAVAGTLKKGF 146
           K+ + + CSI  V AV  AF    + V    E   +AGTLK  F
Sbjct: 176 KIFVYVFCSISVVAAVNTAFLPAPAYVPEKREAVTLAGTLKVTF 219


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 463 PNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPE 320
           P+PE    + E   P+PE   P+P    P P   P+ P P    P PE
Sbjct: 522 PSPEESDDDQELILPSPE---PSPVRE-PTPPPPPREPTPREPTPEPE 565


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = -1

Query: 511  PALSLPKLSSAESPKLPNPESWCP---NPESWCP-NPESWCPNPESWCPNPESCPKL--- 353
            P L+ P  S  +SP +P P +  P    P S  P  P ++   P S+ P   + P +   
Sbjct: 1205 PGLTTPMASIFQSPTMPPPHTPSPFSAGPMSHHPMGPPAYPGTPGSFPPTTPTYPGMTPR 1264

Query: 352  PNPESWCPNP 323
            P P    P P
Sbjct: 1265 PGPNFGPPGP 1274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,464,164
Number of Sequences: 27780
Number of extensions: 248067
Number of successful extensions: 1101
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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