Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n15
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    27   0.20 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.79 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.0  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.4  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
 Frame = -2

Query: 402 VQIRSHGVQIRSHARSYRIQSRGVQIQNRVR--SFRIRSHVQSHRT-QSHDRNYRIQGCD 232
           ++I S G  +R     +    + V I N V    FR+  H Q H T      NY    C+
Sbjct: 154 IEIESFGYTMRDIRYKWNAGLQSVGISNEVELPQFRVLGHRQRHSTIHLSTGNYSRLACE 213

Query: 231 FQ 226
            Q
Sbjct: 214 IQ 215


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 291 HVQSHRTQSHDRNYRIQGCDFQSRQIRNHDQNCR 190
           H+QS   Q H R Y+ Q    Q +Q R  ++  R
Sbjct: 150 HLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLR 183


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 300 IRSHVQSHRTQSHDRNYRIQGCDFQSRQIRNHDQNCR 190
           I+SH ++  T    R YR+    F    + N D+N +
Sbjct: 475 IQSHAKAKNTMIKARQYRLNHKPFTYHIVVNSDKNVK 511


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 300 IRSHVQSHRTQSHDRNYRIQGCDFQSRQIRNHDQNCR 190
           I+SH ++  T    R YR+    F    + N D+N +
Sbjct: 475 IQSHAKAKNTMIKARQYRLNHKPFTYHIVVNSDKNVK 511


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 300 IRSHVQSHRTQSHDRNYRIQGCDFQSRQIRNHDQNCR 190
           I+SH ++  T    R YR+    F    + N D+N +
Sbjct: 101 IQSHAKAKNTMIKARQYRLNHKPFTYHIVVNSDKNVK 137


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 519 KDISSLADHGIDEDKIE--KGLEGIATSLGGI 608
           K+I +L D G+   KIE    + G+A  LG +
Sbjct: 11  KEIKTLPDRGMWSSKIEFILSVVGLAIGLGNL 42


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 519 KDISSLADHGIDEDKIE--KGLEGIATSLGGI 608
           K+I +L D G+   KIE    + G+A  LG +
Sbjct: 64  KEIKTLPDRGMWSSKIEFILSVVGLAIGLGNL 95


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 382 CPNPESCPKLPNPE 341
           CP   +CP  PNP+
Sbjct: 213 CPPTLACPLNPNPQ 226


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 20  GTENYLLYFGCTCSSTSLP 76
           GT +   Y GC  +S S+P
Sbjct: 789 GTSSITKYTGCELTSESMP 807


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 20  GTENYLLYFGCTCSSTSLP 76
           GT +   Y GC  +S S+P
Sbjct: 879 GTSSITKYTGCELTSESMP 897


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,011
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)