Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n13
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144...    29   3.2  
08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139...    29   3.2  
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419...    29   4.2  
04_03_0149 + 11873854-11874135,11874938-11875033                       29   4.2  
03_06_0356 + 33350365-33350707,33351683-33351799,33352663-33352790     28   7.4  

>08_01_0170 -
           1440908-1441072,1441539-1441581,1442155-1442619,
           1442714-1444149
          Length = 702

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 334 EIFVESKR*LSNSVSRIEWCYTFRTTATYIYFYFPNKSYD 215
           EI V S+    N V  I WC+  RT    +Y  FPN+S D
Sbjct: 426 EIKVISRLRHRNLVQLIGWCHG-RTELLLVYELFPNRSLD 464


>08_01_0169 -
           1396657-1396710,1396801-1396843,1397440-1397904,
           1397999-1399395
          Length = 652

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 334 EIFVESKR*LSNSVSRIEWCYTFRTTATYIYFYFPNKSYD 215
           EI V S+    N V  I WC+  RT    +Y  FPN+S D
Sbjct: 413 EIKVISRLRHRNLVQLIGWCHG-RTELLLVYELFPNRSLD 451


>08_01_0475 -
           4185534-4186047,4187437-4187708,4188032-4188979,
           4190096-4190387,4190486-4191357,4192298-4192354,
           4192391-4192504,4192966-4193595
          Length = 1232

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 319 TQQKSPNIVLIIADDLGWDDVSFHGSDQILTPNIDLLA 432
           T Q+SPN   I+ D +  DD+   G++     ++DL A
Sbjct: 7   TGQQSPNATSIVTDLMDLDDIIVEGNEVQFAMDVDLRA 44


>04_03_0149 + 11873854-11874135,11874938-11875033
          Length = 125

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 543 GVSLHSDSMCIFSGQESCPRWCTNTVSIVAS 451
           GV L  + +C+  G+ SCP    N +S++AS
Sbjct: 68  GVYLIREGVCLIHGKLSCPGPIPNGISLIAS 98


>03_06_0356 + 33350365-33350707,33351683-33351799,33352663-33352790
          Length = 195

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -1

Query: 565 LCLHYSLRGIPAFRFDVHIFRSRELPSMVYKYSEYSSVPRPFQSMPKDRCSESI--FGLI 392
           LC+    R  PA  F +++ R+ +LPS     + +S  P+     P  + +E    +   
Sbjct: 76  LCVLVKDRDEPALGFRINVTRAMDLPSGCSIAATFSDCPKMLNMSPDSKEAEIFKQYARE 135

Query: 391 HE--NLRRPIP 365
           HE  N  +P P
Sbjct: 136 HESNNATKPAP 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,751
Number of Sequences: 37544
Number of extensions: 335429
Number of successful extensions: 865
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)