Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5n12
(267 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 26 0.78
SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 2.4
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 2.4
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 24 4.1
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 24 4.1
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 23 5.5
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 23 5.5
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 23 7.2
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 23 7.2
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 23 9.6
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 23 9.6
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 0.78
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 25 ANEFSAEKYVAEKIQKANYTPIPTRWRHKRLPEFIIRQ--LLGIDKKINYK 171
A ++ V I + YT +PT + KR + ++RQ L + KINYK
Sbjct: 215 AEDYWRRHKVRSNIDVSFYTGMPTLFSVKRYSDALLRQNEQLHRNVKINYK 265
>SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 86
Score = 24.6 bits (51), Expect = 2.4
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +1
Query: 13 LVQNANEFSAEKYVAEKIQKANYTPIPTRWRHKRLPEFI 129
L+ N+ V +++ TPIP W+ + P F+
Sbjct: 7 LLPTTNQQQNSSPVIKEVDLNQNTPIPVVWQKTKKPPFV 45
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 2.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 198 LNIKFMVKCRKVCVYYSFTLKKK 266
LN K +V+C +VC ++ +KK+
Sbjct: 151 LNFKSIVQCMQVCKHWRDCIKKE 173
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 23.8 bits (49), Expect = 4.1
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1
Query: 132 YNELRESLVSPASWYRG 82
Y L+++L P+SW++G
Sbjct: 286 YMALKKALYKPSSWFKG 302
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 23.8 bits (49), Expect = 4.1
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +1
Query: 73 ANYTPIPTRWRHKRLPEF 126
A+Y I T+W ++++P+F
Sbjct: 491 ASYNEINTKWGYQQIPKF 508
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 23.4 bits (48), Expect = 5.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 201 LNLSFVCISMFVIDFLVNPKQLTYNELRESLV 106
+ L+F C+ + DFL + Y +L ++L+
Sbjct: 931 VRLAFSCLQLICTDFLASLDTSNYLDLMDTLL 962
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 23.4 bits (48), Expect = 5.5
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 195 LSFVCISMFVIDFLVNPKQLTYNELRESL 109
L+ + +S FV +++ + KQL ++RE+L
Sbjct: 108 LAGILLSPFVGNYVASDKQLYLKKIRENL 136
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 23.0 bits (47), Expect = 7.2
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 168 VIDFLVNPKQLTYNELRESLVSPASWYRGVVRFLNLLRNIFFCGELICVLH 16
V+ FL +P ++ +RE L P + + F +L F G + V+H
Sbjct: 740 VLYFLRDPNDPQFHPIREILEKPMLFQLKKIGFSAILYFAFIIGCVGSVIH 790
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 23.0 bits (47), Expect = 7.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 106 HKRLPEFIIRQLLGIDKKINYKHTDTYKA 192
H+RL I R+ +G++ KH +T +A
Sbjct: 221 HERLRSSISRERIGVEVDKMLKHCNTNRA 249
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 22.6 bits (46), Expect = 9.6
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -1
Query: 150 NPKQLTYNELRESLVSPASWYRGVVRFL 67
NP YN E+ VS W G FL
Sbjct: 189 NPTSYIYNTKTEAEVSKNPWAAGTQLFL 216
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 22.6 bits (46), Expect = 9.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 266 FFFQCKTIINTNFPTFYHKFNI 201
F + K ++ +P FYHK +I
Sbjct: 90 FHYDEKEAVSKYYPQFYHKTDI 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,157,482
Number of Sequences: 5004
Number of extensions: 21499
Number of successful extensions: 53
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -