Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5n12
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1400 + 26779193-26779245,26779622-26779766,26779950-267810... 28 1.2
04_04_1647 + 35032328-35033803 27 2.7
07_03_0263 - 15951011-15951818,15952009-15952526,15952949-159531... 26 3.6
03_05_0489 - 24858483-24858637,24858811-24858921,24859013-248594... 26 3.6
10_08_0322 + 16736013-16736072,16737200-16737305,16737436-167375... 26 4.8
07_01_0703 - 5295561-5297523,5299344-5299462 26 4.8
01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571 26 4.8
05_07_0109 - 27738333-27738434,27739046-27739144,27739798-277399... 25 6.3
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 25 6.3
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042... 25 8.3
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 25 8.3
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 25 8.3
>08_02_1400 +
26779193-26779245,26779622-26779766,26779950-26781059,
26781153-26781404,26782150-26782230,26782623-26782770,
26782858-26783264,26783557-26783613
Length = 750
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 11 LLCRTQMSSPQKNMLRRRFKKRTTPLYQLAGDTR----DSRSSLYVNCLGLTRKSITNIL 178
L R ++ SP KN+L R+F L AGD R DS L ++C ++K+ T +L
Sbjct: 201 LQARKRLLSPLKNVLNRQF--HGDILNISAGDARFELSDSARKLNISCFQDSKKANTGML 258
>04_04_1647 + 35032328-35033803
Length = 491
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 115 VSCVSSELV*GCSSLFESSPQHIF 44
V C SS CSSL +SP H+F
Sbjct: 115 VPCTSSYQCRNCSSLSAASPLHVF 138
>07_03_0263 -
15951011-15951818,15952009-15952526,15952949-15953197,
15953270-15953857
Length = 720
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 198 NLSFVCISMFVIDFLVNPKQLTYNELRESLVSPASW 91
N C+ D +V PK T++E+ +L +PA W
Sbjct: 609 NRVLTCLLRLAHDIIV-PKDPTFSEVHPNLENPAFW 643
>03_05_0489 -
24858483-24858637,24858811-24858921,24859013-24859421,
24859746-24859800,24860042-24860318,24860442-24860562,
24860831-24861438,24861552-24861741
Length = 641
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 198 NLSFVCISMFVIDFLVNPKQLTYNELRESLVSPASW 91
N C+ D +V PK T++E+ +L +PA W
Sbjct: 438 NRVLTCLLRLAHDIIV-PKDPTFSEVHPNLENPAFW 472
>10_08_0322 +
16736013-16736072,16737200-16737305,16737436-16737584,
16738344-16738596,16738928-16739037,16739302-16739376,
16739477-16739563,16739754-16739840,16740021-16740158,
16740438-16740503
Length = 376
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 180 ISMFVIDFLVNPKQLTYNELRESLVSPASWYRGVVRF 70
+ + V+ + + Q YN+ RE+ + + W +G VRF
Sbjct: 103 VFLVVLPYFKSKLQSIYNKEREARLQASLWGQGDVRF 139
>07_01_0703 - 5295561-5297523,5299344-5299462
Length = 693
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 204 YLNLSFVCISMFVIDFLVNPKQLTYNELRESLVS 103
+L + +S+F D++V+ ++L Y + E LVS
Sbjct: 196 HLRACMMYLSLFPEDYVVDKRRLLYRWIAEGLVS 229
>01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571
Length = 498
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 32 SSPQKNMLRRRFKKRTTPLYQLAGDTRDSR 121
+SP+K LRRR ++ +P AG RD+R
Sbjct: 462 ASPEKRELRRRSEELRSPASMFAG-ARDNR 490
>05_07_0109 -
27738333-27738434,27739046-27739144,27739798-27739993,
27740083-27740308,27740585-27740770,27741029-27741305
Length = 361
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 70 KANYTPIPTRWRHKRLPEF 126
K N P RWRH LP+F
Sbjct: 276 KMNTNPCGQRWRHFFLPQF 294
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = -1
Query: 147 PKQLTYNEL----RESLVSPASWYRGVVRFLNLLRN 52
PK +T N++ RE+++S A V+R +N+L+N
Sbjct: 698 PKTMTINDVKKLCREAVISRAHKQNPVIRKVNILKN 733
>12_02_0828 -
23502276-23503472,23503568-23504002,23504097-23504213,
23505330-23505396,23505685-23505725,23506161-23506237,
23506699-23506945
Length = 726
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 147 PKQLTYNELRESLVSPASWYRGVV 76
P+Q+ N++ E L SPAS Y VV
Sbjct: 703 PEQVPENDIPEQLDSPASQYPMVV 726
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 25.0 bits (52), Expect = 8.3
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Frame = +1
Query: 7 LALVQNANEFSAE--KYVAEKIQKANYTPIPTRWRHK----------RLPEFIIRQLLGI 150
LA QN N E Y K ANY P++WR E + +Q+ G+
Sbjct: 579 LAQSQNENSVIQEAMSYCQFKFS-ANYVMSPSQWRKDIVDSPTNKGFHFQEMLKQQIDGV 637
Query: 151 DKKINYKH 174
DK++ Y H
Sbjct: 638 DKRLLYYH 645
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 66 SKSELHPYTNSLETQETP 119
S+SEL P+TN ++ +E P
Sbjct: 654 SRSELAPWTNYVDVEEVP 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,665,086
Number of Sequences: 37544
Number of extensions: 113235
Number of successful extensions: 291
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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