Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5n12
(267 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical pr... 27 1.8
AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical ... 27 2.4
AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical ... 27 2.4
AF016679-5|AAB66157.1| 485|Caenorhabditis elegans Hypothetical ... 26 4.2
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 25 5.6
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 25 5.6
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 23 6.6
AC024798-6|AAK29913.1| 356|Caenorhabditis elegans Hypothetical ... 25 7.4
Z81592-9|CAB63315.1| 945|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 25 9.7
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 25 9.7
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 25 9.7
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 25 9.7
>Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical
protein D1046.4 protein.
Length = 583
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 201 LNLSFVCISMFVIDFLVNPKQLTYNELRESLVSPASWYRGV-VRFLNLLRNIFF 43
+N S +C+S I + N Y LRE++ + + +R + F ++ ++I F
Sbjct: 54 INFSVICMSEEKISTMFNGSHNDYEVLREAIATSMNDFRSIWFTFSSIKQSIMF 107
>AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical
protein F46E10.10b protein.
Length = 273
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 22 NANEFSAEKYVAEKIQKANYTPIPTRWRHKR 114
N N F A KY A KI N++ + TR H R
Sbjct: 134 NTNAFIAAKYAAGKIPAKNFSAM-TRLDHNR 163
>AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical
protein F46E10.10a protein.
Length = 336
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 22 NANEFSAEKYVAEKIQKANYTPIPTRWRHKR 114
N N F A KY A KI N++ + TR H R
Sbjct: 134 NTNAFIAAKYAAGKIPAKNFSAM-TRLDHNR 163
>AF016679-5|AAB66157.1| 485|Caenorhabditis elegans Hypothetical
protein T28C12.2 protein.
Length = 485
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 47 NMLRRRFKKRTTPLYQLAGDTRDSRSSLYVNCLGLTRKSITNILIHTKL 193
N++ + +TPL + D +DS S LY N + L I +++ H L
Sbjct: 263 NIIATNVEVMSTPLTTVLYDWKDSDSILY-NGITLALSCIISVIFHVLL 310
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 103 RHKRLPEFIIRQLLGIDKKINYKHTDT 183
RH+ EF RQL+G + +Y+H +T
Sbjct: 114 RHRMNKEFGNRQLVGPTAQTDYEHDET 140
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 103 RHKRLPEFIIRQLLGIDKKINYKHTDT 183
RH+ EF RQL+G + +Y+H +T
Sbjct: 114 RHRMNKEFGNRQLVGPTAQTDYEHDET 140
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 22.6 bits (46), Expect(2) = 6.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +3
Query: 51 CCGEDSKSELHPYTNSL 101
CC D L PY N++
Sbjct: 215 CCPPDEHGRLRPYCNTI 231
Score = 21.0 bits (42), Expect(2) = 6.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 33 VLRRKICCGEDSK 71
++ K CCG DSK
Sbjct: 180 IMIEKSCCGVDSK 192
>AC024798-6|AAK29913.1| 356|Caenorhabditis elegans Hypothetical
protein Y48G9A.11 protein.
Length = 356
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 76 NYTPIPTRWRHKRLPE 123
N+TPIPT R K+ PE
Sbjct: 33 NFTPIPTTERLKKWPE 48
>Z81592-9|CAB63315.1| 945|Caenorhabditis elegans Hypothetical
protein T16G1.9 protein.
Length = 945
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 23 TQMSSPQKNMLRRRFKKRTTPLYQLAGDTRD 115
T++SS + N L F+ RTT YQL R+
Sbjct: 484 TRLSSCKANYLFVNFEVRTTDRYQLPYTNRE 514
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
C14C10.5 protein.
Length = 1908
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -1
Query: 117 ESLVSPASWYRGVVRFLNLLRNIFFCGELICVLHK 13
+ L+S W++ V L +LR + F + +H+
Sbjct: 1732 QQLLSSPCWWKSKVAALKMLRMLVFSNRFVFRIHR 1766
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 10 ALVQNANE-FSAEKYVAEKIQKANYTPIPTRWRHK 111
A + NA E SAE AE +Q A P P + K
Sbjct: 2497 AQIDNAYEALSAEPAFAESVQNARDKPFPDETKEK 2531
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 10 ALVQNANE-FSAEKYVAEKIQKANYTPIPTRWRHK 111
A + NA E SAE AE +Q A P P + K
Sbjct: 2497 AQIDNAYEALSAEPAFAESVQNARDKPFPDETKEK 2531
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 10 ALVQNANE-FSAEKYVAEKIQKANYTPIPTRWRHK 111
A + NA E SAE AE +Q A P P + K
Sbjct: 311 AQIDNAYEALSAEPAFAESVQNARDKPFPDETKEK 345
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 10 ALVQNANE-FSAEKYVAEKIQKANYTPIPTRWRHK 111
A + NA E SAE AE +Q A P P + K
Sbjct: 2497 AQIDNAYEALSAEPAFAESVQNARDKPFPDETKEK 2531
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 10 ALVQNANE-FSAEKYVAEKIQKANYTPIPTRWRHK 111
A + NA E SAE AE +Q A P P + K
Sbjct: 2497 AQIDNAYEALSAEPAFAESVQNARDKPFPDETKEK 2531
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,322,503
Number of Sequences: 27780
Number of extensions: 117593
Number of successful extensions: 404
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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