Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n12
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   2.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   4.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   6.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   6.1  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 186 VCISMFVIDFLVNPKQLTYNELRESLVSPASWYRGVV 76
           VCISM     ++ P QL   + R  ++   +W   VV
Sbjct: 130 VCISMDRYYAVIKPLQLWDVDKRGKIMLSFAWIGSVV 166


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 63   LLRNIFFCGELICVLHKS 10
            L+ N+F+  E  C+L K+
Sbjct: 1432 LINNVFYEDETSCMLDKT 1449


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 78  LHPYTNSLETQETPGVHYTST 140
           L P +NS+E Q +     TST
Sbjct: 552 LRPGSNSIERQSSESPFTTST 572


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 78  LHPYTNSLETQETPGVHYTST 140
           L P +NS+E Q +     TST
Sbjct: 552 LRPGSNSIERQSSESPFTTST 572


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,700
Number of Sequences: 438
Number of extensions: 1406
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)