Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n08
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    25   1.1  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    25   1.5  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    23   4.5  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    23   4.5  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    23   7.8  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    23   7.8  
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.8  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 28  RPVLHLQPRIQRCLGARYDRERL 96
           RP +H  P+I R LG  YD   L
Sbjct: 106 RPDVHALPKIYRTLGGDYDERVL 128


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 90  TPRETARPLDTTVKSPVFLKSTRGSLHLSK 179
           TPRETA+ L   + +P      R SL   K
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSLTTPK 236


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 99  ETARPL--DTTVKSPVFLKSTRGSLHLSK 179
           +T  PL   +T K PVFL S R   H SK
Sbjct: 35  QTCSPLRAHSTFKEPVFLLSQRQYSHNSK 63


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 73  ARYDRERLGRPQGRW 117
           + +DR RLGR  G W
Sbjct: 154 SHFDRYRLGRKSGSW 168


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 150 ISGRPETSPSCPTAL 106
           I+G PETS +CP ++
Sbjct: 57  ITGFPETSKNCPPSV 71


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 144 GRPETSPSCPTALRS 100
           GRP  SPS PT++ S
Sbjct: 319 GRPTKSPSVPTSVGS 333


>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 150 ISGRPETSPSCPTALR 103
           +S +PET+P  P +L+
Sbjct: 103 VSSKPETNPKTPISLK 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 965,389
Number of Sequences: 5004
Number of extensions: 16722
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)