Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5n08
(250 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1324 - 25825153-25825197,25825705-25825785,25825907-258259... 27 1.6
12_02_0961 - 24851687-24851962,24852134-24852405,24852521-248529... 27 2.8
06_03_0257 + 18846638-18846850,18846934-18847689 26 3.7
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 26 4.8
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980... 26 4.8
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540... 26 4.8
05_05_0173 + 22956927-22958615 26 4.8
01_07_0171 + 41683670-41683872,41684386-41684483,41684614-416846... 26 4.8
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 26 4.8
08_02_1286 - 25882773-25883771 25 6.4
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654... 25 6.4
06_02_0199 - 12940459-12940689,12940787-12940930 25 8.5
06_01_1082 - 8847795-8848033,8848511-8848724 25 8.5
>07_03_1324 -
25825153-25825197,25825705-25825785,25825907-25825967,
25826005-25826060,25826171-25826239,25826366-25826473,
25826555-25826635,25826795-25826951,25827060-25827177,
25827285-25827339,25827779-25827814
Length = 288
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 79 IELQGIVEFAVVDEEQDVVFVLGGP 5
+ ++G+ E + D++ VVFVLGGP
Sbjct: 9 VVVEGVAENMLGDKKVTVVFVLGGP 33
>12_02_0961 -
24851687-24851962,24852134-24852405,24852521-24852953,
24853554-24853676,24853681-24853686
Length = 369
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 20 ENDVLFFIYNREFNDALELDTIV-NASGDRK 109
END+LFF N N + D ++ +ASG K
Sbjct: 99 ENDLLFFTCNGRCNGSFSFDVLIFDASGCEK 129
>06_03_0257 + 18846638-18846850,18846934-18847689
Length = 322
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 2 GRPAKYENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEVSGLPEIYS 157
G A ++ N+ F D L+ ++ + D++ H GEVS L E+Y+
Sbjct: 234 GGEAPFDEQTPMRFDNKYFQDLLQRRGLLTS--DQELYTHGGEVSDLVEMYA 283
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 20 ENDVLFFIYNREFNDALELDTIV-NASGDRK 109
END+LFF N N + D ++ +ASG K
Sbjct: 76 ENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106
>06_03_1274 +
28897491-28897707,28897804-28897935,28898029-28898096,
28898216-28898280,28898468-28898534,28898630-28898917,
28898995-28899102,28899236-28899487,28899918-28899997,
28900092-28900185,28900728-28900810,28901319-28901873,
28902085-28902616
Length = 846
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 17 YENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEVSGLPE 148
Y V FF YN+ F+ + + T+V +G+ ++G G + L +
Sbjct: 764 YSGSVGFFSYNKTFDLNIVIRTVVLHNGE-ASIGAGGAIVALSD 806
>06_01_0733 +
5405889-5405922,5405923-5405975,5406430-5406543,
5407464-5407523,5408139-5408217,5410661-5410728,
5411198-5411302,5411887-5411994,5412087-5412279,
5412818-5412897,5413309-5413536,5414112-5414252,
5414341-5414466,5414561-5414611,5414879-5414956,
5415814-5415960,5416685-5417179
Length = 719
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 121 VSNGLAVSRGVHDRIEL 71
+SN ++ SRG+HD +EL
Sbjct: 445 ISNSMSNSRGMHDNLEL 461
>05_05_0173 + 22956927-22958615
Length = 562
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 1 RPARQVRKRRPVLHLQPRIQRCLGARYDRERL 96
RP R R R PV+ L R RCL R R L
Sbjct: 148 RPERVDRYRPPVICLNSRQSRCLRPRRFRSDL 179
>01_07_0171 +
41683670-41683872,41684386-41684483,41684614-41684692,
41684845-41685000,41685021-41685146,41686249-41686540,
41686978-41687053,41687295-41687392,41687523-41687665,
41688522-41688579,41689055-41689213,41689291-41689343,
41689978-41690212,41690317-41690403,41690607-41690711
Length = 655
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 144 GRPETSPSCPTALRSPEAFTIVSSSKASLNS 52
GRP+TS + P SPE + S + NS
Sbjct: 283 GRPKTSIANPATKTSPEVTYLTSQESLNYNS 313
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 178 LERCNEPRVDFRKTGDFTVV 119
LE C EP V F ++ +FT V
Sbjct: 1374 LESCKEPSVSFEESANFTSV 1393
>08_02_1286 - 25882773-25883771
Length = 332
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 132 TSPSCPTALRS--PEAFTIVSSSKASLNSR 49
++PS P +L S P A T+ ++ ASLNSR
Sbjct: 85 SNPSTPDSLLSSFPPAVTLHRTASASLNSR 114
>03_02_0222 +
6540095-6540099,6541215-6541339,6541440-6541766,
6541815-6543215,6543268-6543357,6543800-6544515,
6545549-6545707,6545877-6546186,6546794-6546861,
6547354-6547896
Length = 1247
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 106 AVSRGVHDRIELQGIVEFAVVDEEQDVV 23
A S G R L GI + AVVDEE +++
Sbjct: 497 AWSAGERQRPALTGIAQQAVVDEESEML 524
>06_02_0199 - 12940459-12940689,12940787-12940930
Length = 124
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 147 SGRPETSPSCPTALRS 100
SGRP +SPS P LR+
Sbjct: 38 SGRPRSSPSSPPLLRA 53
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 17 YENDVLFFIYNREFND 64
Y DVL F YN+E++D
Sbjct: 66 YAGDVLVFKYNKEYHD 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,143,357
Number of Sequences: 37544
Number of extensions: 105116
Number of successful extensions: 283
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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