Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n08
         (250 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    27   2.3  
U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine...    26   3.1  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    26   3.1  
Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z54269-1|CAA91022.2|  815|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL117202-9|CAB57892.1|  352|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 90  TPRETARPLDTTVKSPVFLKST 155
           TP+ + +P  TT KSPV + +T
Sbjct: 399 TPKPSQKPTTTTTKSPVVITTT 420


>U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical
          protein F35A5.2 protein.
          Length = 111

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 14 KYENDVLFFIYNREFND 64
          KY N    F YNRE+ND
Sbjct: 29 KYNNPPFCFAYNREYND 45


>Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical
           protein R06A4.10b protein.
          Length = 511

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 10  RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWT 120
           R +R   P++  Q   Q+    +  R+++GR Q  WT
Sbjct: 310 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWT 346


>Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical
           protein R06A4.10a protein.
          Length = 514

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 10  RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWT 120
           R +R   P++  Q   Q+    +  R+++GR Q  WT
Sbjct: 310 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWT 346


>AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine
           receptor alternativevariant b protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 10  RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWT 120
           R +R   P++  Q   Q+    +  R+++GR Q  WT
Sbjct: 255 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWT 291


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
           receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 10  RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWT 120
           R +R   P++  Q   Q+    +  R+++GR Q  WT
Sbjct: 352 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWT 388


>Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 20  ENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEVSGLPEIYSWFI 166
           E DV F  ++++F    ELD  V     RKA  +  E   L  I  WF+
Sbjct: 676 ELDVFFANFSKKFEKPEELDVRVEQKERRKA-KNPNERERLDRIPWWFV 723


>AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 20  ENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEVSGLPEIYSWFI 166
           E DV F  ++++F    ELD  V     RKA  +  E   L  I  WF+
Sbjct: 676 ELDVFFANFSKKFEKPEELDVRVEQKERRKA-KNPNERERLDRIPWWFV 723


>Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical
           protein F42E11.1 protein.
          Length = 1266

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -1

Query: 199 NSSASGRLERCNEPRVD-FRKTGDFTVVSNGLAVSRGVHDRI 77
           + ++ GR   C   R+   R      V   GL   RG+HD++
Sbjct: 556 DKASEGRTTLCIAHRLSTIRNASKILVFDQGLIPERGIHDQL 597


>Z54269-1|CAA91022.2|  815|Caenorhabditis elegans Hypothetical
           protein F02C12.1 protein.
          Length = 815

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 121 VSNGLAVSRGVHDRIEL 71
           + NG+A+ +GV DRIE+
Sbjct: 725 IPNGVAIRKGVIDRIEI 741


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical protein
            R09A8.1 protein.
          Length = 1095

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 205  TYNSSASG-RLERCNEPRVDFRKTGDFTVV 119
            T N++AS     RC  P V   K G F+V+
Sbjct: 923  TVNAAASKFAAPRCQAPNVSHMKNGQFSVI 952


>AL117202-9|CAB57892.1|  352|Caenorhabditis elegans Hypothetical
           protein Y47D3A.12 protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 72  SSIRS*TPRETARPLDTTVKSPVFLKSTRGSLHLSKRPE 188
           S+I S TP   + P+D T ++P F      S   S +P+
Sbjct: 257 SAISSLTPPAISPPMDYTQQNPYFFNQNFFSTPQSHQPQ 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,367,251
Number of Sequences: 27780
Number of extensions: 91785
Number of successful extensions: 213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)