Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n08
         (250 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   1.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   1.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   1.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   2.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   4.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   5.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   7.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   7.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 1.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 187 SGRLERCNEPRVDFRK 140
           SG+LER  E R+  RK
Sbjct: 554 SGKLERTEEQRIALRK 569


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 1.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 187 SGRLERCNEPRVDFRK 140
           SG+LER  E R+  RK
Sbjct: 592 SGKLERTEEQRIALRK 607


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 17  YENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEV 133
           Y+N +++ IY R F D+ + D I + +G    + H  ++
Sbjct: 27  YKNALVYQIYPRSFQDS-DGDGIGDLNGITARMDHIADI 64


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 172 RCNEPRVDFRKTGDFTVVSNGLAVSRG 92
           +CN+ + D  +TG      +G   SRG
Sbjct: 67  QCNDKKTDIEETGRGKGRGHGKGGSRG 93


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -1

Query: 196 SSASGRLERCNEPRVDFRKTGDFTVVSNGLAVSRGVHDRIELQGI 62
           S  +  L   N P     K GD+T +   +  + G    I+L  I
Sbjct: 10  SYCTWELNATNSPHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNI 54


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 135 ETSPSCPTALRSPEAFTIVSSSKASLNSRL*MKNRTS 25
           E SP CP A R   + +I   S  S  S    +NR S
Sbjct: 207 EQSPLCPPAPRLTNSNSIKHESDNSDYSHTTDENRHS 243


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 47  NREFNDALELDTIVN 91
           N E ND  ++D+I+N
Sbjct: 97  NWEMNDINKIDSIIN 111


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 37  LHLQPRIQRC 66
           LH+QPR + C
Sbjct: 391 LHMQPRKKNC 400


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 37  LHLQPRIQRC 66
           LH+QPR + C
Sbjct: 391 LHMQPRKKNC 400


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 32  LFFIYNREFNDALELDTIVNASGDRKAVGHDGEVSGLPE 148
           L +IYN  F+D  E      A    + V  D  +S   E
Sbjct: 321 LVYIYNNPFSDVEERRVSKTAMNSNQIVS-DNSLSSSEE 358


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 140 LPEIYSWFITPF 175
           L EIY+WF   F
Sbjct: 527 LNEIYNWFQNTF 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,425
Number of Sequences: 438
Number of extensions: 1619
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)