Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n07
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   0.86 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   0.86 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   0.86 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   0.86 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.0  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   4.6  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   4.6  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   4.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.6  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   8.1  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.1  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    21   8.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 113 DPLLHFTISKLIFEQCHILYLTDSHHGNV 27
           DPL  F I  + +EQ  I Y+  +  G +
Sbjct: 197 DPLCSFAIESISYEQTAITYVWKNDEGTL 225


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 113 DPLLHFTISKLIFEQCHILYLTDSHHGNV 27
           DPL  F I  + +EQ  I Y+  +  G +
Sbjct: 197 DPLCSFAIESISYEQTAITYVWKNDEGTL 225


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 113 DPLLHFTISKLIFEQCHILYLTDSHHGNV 27
           DPL  F I  + +EQ  I Y+  +  G +
Sbjct: 248 DPLCSFAIESISYEQTAITYVWKNDEGTL 276


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 113 DPLLHFTISKLIFEQCHILYLTDSHHGNV 27
           DPL  F I  + +EQ  I Y+  +  G +
Sbjct: 197 DPLCSFAIESISYEQTAITYVWKNDEGTL 225


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = +3

Query: 219 GKCYCADGFVPNQFHDRCVPCP 284
           G C+C  G+  +     C  CP
Sbjct: 245 GGCHCKPGYQADVEKQECTECP 266


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 6   LRFYNTPYVSMMRIC*VQYVTLFENKF*NRKMQKWIT 116
           L++YN  Y+  + +     V ++   F  R M  WI+
Sbjct: 100 LQYYNINYIEQIPVPVPVPVPVYYGNFPPRSMGPWIS 136


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 6   LRFYNTPYVSMMRIC*VQYVTLFENKF*NRKMQKWIT 116
           L++YN  Y+  + +     V ++   F  R M  WI+
Sbjct: 100 LQYYNINYIEQIPVPVPVPVPVYYGNFPPRSMGPWIS 136


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 6   LRFYNTPYVSMMRIC*VQYVTLFENKF*NRKMQKWIT 116
           L++YN  Y+  + +     V ++   F  R M  WI+
Sbjct: 100 LQYYNINYIEQIPVPVPVPVPVYYGNFPPRSMGPWIS 136


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 6   LRFYNTPYVSMMRIC*VQYVTLFENKF*NRKMQKWIT 116
           L++YN  Y+  + +     V ++   F  R M  WI+
Sbjct: 333 LQYYNINYIEQIPVPVPVPVPVYYGNFPPRSMGPWIS 369


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 337 VPFPYLLQQGPKHFSPRPGHG 275
           VP P + Q G + F   PG G
Sbjct: 21  VPLPNVPQPGRRPFPTFPGQG 41


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 6   LRFYNTPYVSMMRIC*VQYVTLFENKF*NRKMQKWIT 116
           L++YN  Y+  + +     V ++   F  R M  WI+
Sbjct: 100 LQYYNINYIEQIPVPVPIPVPVYYGNFLPRPMGPWIS 136


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +3

Query: 312 CCNRYGNGTLQCW 350
           C N Y   +L CW
Sbjct: 110 CVNPYDRDSLSCW 122


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 337 VPFPYLLQQGPKHFSPRPGHG 275
           VP P + Q G + F   PG G
Sbjct: 7   VPLPNVPQPGRRPFPTFPGQG 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,745
Number of Sequences: 438
Number of extensions: 3663
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)