Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5n06
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-1|CAA97424.1|  117|Caenorhabditis elegans Hypothetical pr...    47   1e-05
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U42841-14|AAC48172.3|  469|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z71261-4|CAA95804.1|  126|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL033514-2|CAA22093.2|  233|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF172091-1|AAD48875.1|  233|Caenorhabditis elegans NOB-1B protei...    28   4.9  
U97017-6|AAB52362.1|  374|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    27   8.6  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z73103-1|CAA97424.1|  117|Caenorhabditis elegans Hypothetical
           protein C08F8.1 protein.
          Length = 117

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 32/115 (27%), Positives = 54/115 (46%)
 Frame = +2

Query: 83  DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMA 262
           D E+ +AF DLQ    ET+  I   +    V  +    +  T++ +  L    K Y S+ 
Sbjct: 3   DEEISKAFRDLQFKTNETRMRIVQGEQNKKVNYQKMRISESTKKNLVDLDENLKYYRSVG 62

Query: 263 RMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKR 427
           RMF+ +D          +      +I+ +  +K  L   L E+E+N+R+LIQ +R
Sbjct: 63  RMFLLTDKPAEISRHEAEAKQSKEKIEAIEKQKDYLEKGLVEAETNLRELIQSRR 117


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +2

Query: 224 VLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVC--LNHTLNESES 397
           VL P    YE  A + VQSD      +L    + LI  + +L ++ +    NH+ N    
Sbjct: 206 VLDPAI-AYEISATVTVQSD-----PDLEIDYDNLIQSLKELQDQAIVRPANHSSNRLSE 259

Query: 398 NIRDLIQQKRMKNENQPAAES 460
             R L+ ++R  + N P  +S
Sbjct: 260 ETRKLLNKRRFMDRNDPQFKS 280


>U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical
           protein C06A8.5 protein.
          Length = 479

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +2

Query: 278 SDLEHIKQNLRQKTNTLISRIDDLNNR------KVCLNHTLNESESNIRDLIQQKRMKN 436
           +D+E +K+ LRQK   L    DDL N+      K+ L     E    +RDL  +   KN
Sbjct: 12  ADVERLKKILRQKDEMLEEMEDDLKNQGKPCSSKLSLEERAQELSEQLRDLHVEMDGKN 70


>U42841-14|AAC48172.3|  469|Caenorhabditis elegans Hypothetical
           protein T17H7.7 protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 83  DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVL---PPGTKTYE 253
           DLE+ Q F  L +   ETK  +E ++  +      +M T+ T  E+  +   P  T T  
Sbjct: 188 DLEVVQLFKKLNLSKEETKSIVERVEQVVREKLMSKMDTSSTTTEVTTVVTTPSTTTTTT 247

Query: 254 SMARMFVQSDLEHIKQNLRQK 316
           S  +    +  E I++ + ++
Sbjct: 248 STTQAPTTTTKEFIEEEIEEE 268


>Z71261-4|CAA95804.1|  126|Caenorhabditis elegans Hypothetical
           protein F21C3.5 protein.
          Length = 126

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
 Frame = +2

Query: 140 KTIENIDHQLAVLGRMQMHTNLTQR-----EIDVLPPGTKTYESMARMFVQSDLEHIKQN 304
           +T+E  D +     R +M   LT+      E+D++   +K Y+ +  + V+ DLE  +  
Sbjct: 15  RTLEK-DREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEARST 73

Query: 305 LRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPAAES 460
           + ++   + S    +      ++    E    + ++  QK  +   Q AA++
Sbjct: 74  VEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNM--QKSFQMMAQAAAQA 123


>AL033514-2|CAA22093.2|  233|Caenorhabditis elegans Hypothetical
           protein Y75B8A.2a protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 405 LMLDSLSFKVWFKHTFRLFKS-SMRLINV 322
           LMLD    KVWF+  +R + + S+ +INV
Sbjct: 199 LMLDEKQVKVWFQVCYRQYSAESLEIINV 227


>AF172091-1|AAD48875.1|  233|Caenorhabditis elegans NOB-1B protein
           protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 405 LMLDSLSFKVWFKHTFRLFKS-SMRLINV 322
           LMLD    KVWF+  +R + + S+ +INV
Sbjct: 199 LMLDEKQVKVWFQVCYRQYSAESLEIINV 227


>U97017-6|AAB52362.1|  374|Caenorhabditis elegans Hypothetical
           protein F47B3.7 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 320 NTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQP 448
           NT  SR   ++  +  ++HTLN+  S +RD   +   KN N P
Sbjct: 41  NTAQSRRMHVSIVRPWVHHTLNKGVSKLRDEFSEVANKNPNVP 83


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 224 VLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVC--LNHTLNESES 397
           VL P    Y   A + VQSD      +L    + LI  + +L ++ +    NH+ N    
Sbjct: 377 VLDPAI-AYAISATVTVQSD-----PDLDTDYDNLIQSLKELQDQAIVRPANHSSNRLSE 430

Query: 398 NIRDLIQQKRMKNENQPAAES 460
             R L+ ++R  + N P  +S
Sbjct: 431 ETRKLLNKRRFMDRNDPQFKS 451


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 224 VLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVC--LNHTLNESES 397
           VL P    Y   A + VQSD      +L    + LI  + +L ++ +    NH+ N    
Sbjct: 116 VLDPAI-AYAISATVTVQSD-----PDLDTDYDNLIQSLKELQDQAIVRPANHSSNRLSE 169

Query: 398 NIRDLIQQKRMKNENQPAAES 460
             R L+ ++R  + N P  +S
Sbjct: 170 ETRKLLNKRRFMDRNDPQFKS 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,318
Number of Sequences: 27780
Number of extensions: 239309
Number of successful extensions: 633
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)