Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m24
         (232 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I5A4 Cluster: Pre-mRNA splicing factor RNA helicase, ...    36   0.13 
UniRef50_Q4DV10 Cluster: Putative uncharacterized protein; n=1; ...    34   0.71 
UniRef50_Q7QHM9 Cluster: ENSANGP00000002208; n=7; Anopheles gamb...    33   1.2  
UniRef50_Q03CU7 Cluster: Putative uncharacterized protein; n=1; ...    31   6.6  
UniRef50_Q3L0S2 Cluster: Putative host-specificity protein; n=4;...    31   6.6  
UniRef50_Q23DP0 Cluster: Putative uncharacterized protein; n=1; ...    30   8.7  

>UniRef50_Q8I5A4 Cluster: Pre-mRNA splicing factor RNA helicase,
            putative; n=1; Plasmodium falciparum 3D7|Rep: Pre-mRNA
            splicing factor RNA helicase, putative - Plasmodium
            falciparum (isolate 3D7)
          Length = 1168

 Score = 36.3 bits (80), Expect = 0.13
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 2    VNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVI--HNISETFCY 175
            V S + H   I +  KG  KEK A N    +I     +  LF N+YK    +N S +FCY
Sbjct: 978  VASMLTHANNIFYVQKG--KEKEAENIKKMFIIEGGGDFLLFLNIYKQCEENNFSTSFCY 1035

Query: 176  D 178
            D
Sbjct: 1036 D 1036


>UniRef50_Q4DV10 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 130

 Score = 33.9 bits (74), Expect = 0.71
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 232 FFFYWRL-PLFYEFTL*FAVITKCFRYIMYNLI 137
           FFF+WRL PLF +FTL F   +  F Y    LI
Sbjct: 56  FFFFWRLLPLFVDFTLRFLFSSLIFVYFKRTLI 88


>UniRef50_Q7QHM9 Cluster: ENSANGP00000002208; n=7; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000002208 - Anopheles gambiae
           str. PEST
          Length = 486

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
 Frame = +2

Query: 5   NSTIFHTTAILHSPKG-VSKEKRATNSFLF-----YIFYKACNVTLF-YNLYKVIHNISE 163
           N+TI HT  +  +  G V +   ATN FL      Y+    CN  L  +N YKV   ++E
Sbjct: 344 NATILHTLILERTELGPVCEANPATNKFLLDLILRYMQIVNCNRKLLSFNAYKVNEYVAE 403

Query: 164 TFCYDC 181
           +F   C
Sbjct: 404 SFAVGC 409


>UniRef50_Q03CU7 Cluster: Putative uncharacterized protein; n=1;
           Lactobacillus casei ATCC 334|Rep: Putative
           uncharacterized protein - Lactobacillus casei (strain
           ATCC 334)
          Length = 318

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +3

Query: 24  QLRYFIHRKVFRRKKGLQTHSFSIFFTRLVM 116
           QL  +++  V+ ++ G++TH+F IF + LVM
Sbjct: 111 QLSTYLNTGVYTKQPGVKTHTFKIFLSILVM 141


>UniRef50_Q3L0S2 Cluster: Putative host-specificity protein; n=4;
           Lactobacillus phage Lc-Nu|Rep: Putative host-specificity
           protein - Lactobacillus rhamnosus Lc-Nu-like prophage
          Length = 989

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 53  VSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFCY 175
           +S E  AT  ++F  F    NVT ++N     HNI  ++ Y
Sbjct: 847 ISAENAATKKYVFSTFKSTDNVTYYWNNTTAYHNIDFSWGY 887


>UniRef50_Q23DP0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 700

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 83  FLFYIFYKACNVTLFYNLYKVIHNISETFCY-DCKLKCKF 199
           F  Y  Y   N    ++LY+ ++++ + F Y D K++CKF
Sbjct: 321 FSGYFIYSTLNHDKAFSLYEYLYSLDKPFIYSDRKVQCKF 360


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,095,775
Number of Sequences: 1657284
Number of extensions: 3143213
Number of successful extensions: 7836
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7832
length of database: 575,637,011
effective HSP length: 55
effective length of database: 484,486,391
effective search space used: 10174214211
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)