Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m24
         (232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   1.3  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    24   2.3  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    23   4.1  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    23   5.4  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    23   7.2  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    23   7.2  
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...    23   7.2  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    22   9.5  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    22   9.5  

>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 50  GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 145
           G S E     S+   IFY       FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -3

Query: 197 IYTLVCSHNKMFQIYYV*PY-INYKIMLHYKPCKKYRKGMSL*PFFPSKHLSVNEVSQLY 21
           ++TL+ SHN  + ++Y   Y +  + +L+ K   ++ + + L  F  S HL    ++   
Sbjct: 290 LFTLMISHNLDYPLFYPKLYALLDRNLLYLKTRSRFFRLLDL--FLSSTHLPATLIASFI 347

Query: 20  EKL 12
           ++L
Sbjct: 348 KRL 350


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 65  KRATNSFLFYIFYKACNVTLFY 130
           K A++SF   IF K C  TL++
Sbjct: 59  KYASSSFAERIFCKNCGTTLYF 80


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +2

Query: 11  TIFHTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFCYDCKLK 190
           TI +   +L S     +   A  S   Y+ YK   + +F  L  +   I+  F Y   L 
Sbjct: 44  TIPYHLHVLDSRYADGRCSAAMRSLSNYVLYKNNPLVVFLYLALITIGIASFFIYGSSLT 103

Query: 191 CKF 199
            KF
Sbjct: 104 QKF 106


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 113 NVTLFYNLYKVIHNISETFCYD 178
           N TL  ++++++ N  ETFC D
Sbjct: 184 NATL--SMHQLVENSDETFCID 203


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 128 YNLYKVIHNISETFCYDCKLKCKFIE 205
           +NLY+  H+ISE       L  KF+E
Sbjct: 77  WNLYESTHDISELHKITPILASKFLE 102


>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 35  LHSPKGVSKEKRATNSFLFYIFY 103
           ++ P  +SK  + ++  LFYIFY
Sbjct: 72  VNPPPAISKIFQFSDETLFYIFY 94


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 101 KKYRKGMSL*PFFPSKHLSVNEVSQLYE 18
           K Y  G    PFF + HL   E++++++
Sbjct: 316 KGYIVGGEAVPFFMASHLDSEELARIWD 343


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
          Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 45 RKVFRRKKGLQTHSFSI 95
          +K+F++KKG+  H + +
Sbjct: 2  KKLFKKKKGVSPHMYML 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 921,507
Number of Sequences: 5004
Number of extensions: 15529
Number of successful extensions: 53
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)