Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m24
         (232 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     29   0.70 
07_03_0473 - 18525712-18525858,18526049-18526162,18526442-185265...    25   8.6  
07_01_1123 - 10385215-10385574,10385676-10385810,10386385-103870...    25   8.6  

>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 134 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 54
           N   M    PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684


>07_03_0473 -
           18525712-18525858,18526049-18526162,18526442-18526522,
           18526787-18526865,18526902-18526996,18527092-18527170,
           18527339-18527450,18527682-18527770,18527868-18527938,
           18528846-18528962
          Length = 327

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 83  FLFYIFYKACNVTLFYNLYKVIHNISE 163
           F F +F K CN+ ++Y + +   N+++
Sbjct: 175 FDFMVFTKQCNLIIYYAMIEQYDNLAQ 201


>07_01_1123 -
           10385215-10385574,10385676-10385810,10386385-10387091,
           10387158-10387455
          Length = 499

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 20  HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFCYDC 181
           +T  I   PK +  EKRA+ +  F+   K C     +   K +H++S +  ++C
Sbjct: 446 NTYVIAEQPKLLEFEKRASKTAHFHFRSKKCYYDWVH--IKDVHDLSLSDPFEC 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,084,790
Number of Sequences: 37544
Number of extensions: 74297
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)