Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m24
         (232 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   0.44 
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   1.8  
AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical...    27   2.4  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    25   5.5  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    25   7.2  
AF016684-5|AAB66207.2|  297|Caenorhabditis elegans Hypothetical ...    25   9.5  

>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 65  KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 172
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 20  HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 136
           H TA L S K V+  K+    F+ +  ++ C+  LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145


>AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical
           protein Y47G6A.31 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 125 FYNLYKVIHNISETFCYDC 181
           F +L K++ N   TFCY C
Sbjct: 44  FQHLPKLLENCGHTFCYSC 62


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 227 FLLEATFIL*IYTLVCSHNKMFQIYYV*PYIN 132
           FL+    I  +  L C  + +FQIY++ PY N
Sbjct: 267 FLISQYTITCLGALPCFLDPIFQIYFITPYRN 298


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 95  YRKGMSL*PFFPSKHLSVNEVSQLYEKLCC 6
           YR+G++    F SK++   +  +L+ K CC
Sbjct: 198 YREGIAFDRLFRSKNIGSRQKIRLFLKNCC 227


>AF016684-5|AAB66207.2|  297|Caenorhabditis elegans Hypothetical
           protein F45C12.8 protein.
          Length = 297

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 7   QHNFSYNCDTSFTERCFEGKK 69
           Q +F  NC+  F ++C +G K
Sbjct: 177 QLDFDDNCEQGFRDKCIDGVK 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,032,210
Number of Sequences: 27780
Number of extensions: 87232
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)