Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m24
         (232 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   0.37 
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   2.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   4.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   4.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   4.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   4.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   4.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   4.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   6.1  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    19   6.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   8.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 0.37
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 76  CSPFFLRNTFR*MKYRSCMKN 14
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 67 FFLRNTFR*MKYRSCMKN 14
          FF R+  + ++YR C KN
Sbjct: 41 FFRRSIQQKIQYRPCTKN 58


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 122 LFYNLYKVIHNISETF 169
           +FY LYK + N+ + +
Sbjct: 433 VFYQLYKKVMNLYQQY 448


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 32  ILHSPKGVSKEKRATNSFLFYI-FYKACNV 118
           +L +  GVSK  R  N+F + +   K C++
Sbjct: 190 LLETAMGVSKPTRDHNAFEYAMAVMKMCDI 219


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = -2

Query: 147 ITLYKL*NNVTLQAL*KI*KRNEFVALFSFET 52
           I+ +++ NNVT+Q L K+ + +++ ++    +
Sbjct: 62  ISSHQIANNVTMQLLPKLMEFDDWTSVMELHS 93


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 11  TIFHTTAILHSPKGVSKEKRATNSFL 88
           T FH T I++       EKR  N  L
Sbjct: 38  TYFHHTYIIYESLCGRHEKRLLNELL 63


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 11  TIFHTTAILHSPKGVSKEKRATNSFL 88
           T FH T I++       EKR  N  L
Sbjct: 38  TYFHHTYIIYESLCGRHEKRLLNELL 63


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 62  PSKHLSVNEVSQLYEKLCC 6
           P K L++NE+   ++   C
Sbjct: 521 PDKQLTLNEIYNWFQNTFC 539


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 45  RKVFRRKKGLQTHS 86
           R  F RK+G QT++
Sbjct: 265 RSQFERKRGRQTYT 278


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 165 VSDILCITLYKL 130
           V DI+C  +YK+
Sbjct: 119 VDDIICTRVYKI 130


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -1

Query: 229 FFYWRL 212
           FFYWR+
Sbjct: 265 FFYWRI 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,778
Number of Sequences: 438
Number of extensions: 1013
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)