Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m18
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    34   0.015
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   5.2  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    25   9.1  

>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 12/21 (57%), Positives = 20/21 (95%)
 Frame = +2

Query: 458 RTMFIQTQDTPNPNSLKFLPG 520
           R+++I++++TPN N+LKFLPG
Sbjct: 41  RSIWIRSEETPNENALKFLPG 61


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 355  IRINFTKADKKVPWTIRYFKV*HSTKESSSFCMLPY 462
            + +  T+  K VPW +R  K+    K     C++ Y
Sbjct: 920  LSLRLTERKKFVPWILRGLKLASEGKPLEDLCLVQY 955


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 81  ITNKILR*NYQLSTTVNTCFVKFKIAV 1
           +++K LR  Y LS  V+TC  +F+I+V
Sbjct: 226 LSHKTLR-EYSLSNRVDTCRNQFRISV 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,634
Number of Sequences: 5004
Number of extensions: 31564
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)