Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m18
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920           38   0.007
04_04_1214 - 31798271-31799134,31799218-31799301,31799469-317996...    28   5.3  
06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245     27   9.2  

>05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920
          Length = 139

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 16/21 (76%), Positives = 16/21 (76%)
 Frame = +2

Query: 458 RTMFIQTQDTPNPNSLKFLPG 520
           R MFIQTQ TPNP SL F PG
Sbjct: 23  RGMFIQTQSTPNPQSLMFYPG 43


>04_04_1214 -
           31798271-31799134,31799218-31799301,31799469-31799614,
           31799658-31799739
          Length = 391

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 465 MVRKHAKRAGLFCGMSDFKIPDSPXYFLVCLCKVDANSTR 346
           M  K  K    +  +S   IP SP    VC    D NST+
Sbjct: 340 MAAKSEKHRNPYSELSKTHIPGSPATIPVCTATTDVNSTK 379


>06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245
          Length = 396

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 386 KYXGLSGILKSDIPQKSPALFACFRT 463
           ++ G  G+L ++   ++PALFA FRT
Sbjct: 265 EHTGADGVLSAETLLENPALFAGFRT 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,343,776
Number of Sequences: 37544
Number of extensions: 158331
Number of successful extensions: 281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)