Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m18
         (525 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   2.1  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   3.6  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    24   3.6  
DQ182015-1|ABA56307.1|  353|Anopheles gambiae G(alpha)q2 protein.      23   6.3  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 276 KLLKQLKLCYERHYAF*KVVNSATVYY-SHQLY 371
           K LK++K    RHY   +   S ++Y+ +H LY
Sbjct: 412 KRLKRVKRAAYRHYQTRRCQRSRSIYFDTHSLY 444


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 89  LVKSQIKF*DEIINCQQQSTHALSNS 12
           LVK +IK  DE+++ ++     L NS
Sbjct: 356 LVKEEIKQYDELVSAKESKESTLKNS 381


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 127 INQVWLMCLNLSNW*NHK*NFKMKLSIVNNSQHML 23
           ++ +W++  N   + N   +FKMKLSI+    HM+
Sbjct: 504 LDPLWMLATNKIIFLN---SFKMKLSIIFGVVHMI 535


>DQ182015-1|ABA56307.1|  353|Anopheles gambiae G(alpha)q2 protein.
          Length = 353

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 380 SAFVKLMRIVHG 345
           S F+K MRI+HG
Sbjct: 47  STFIKQMRIIHG 58


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,859
Number of Sequences: 2352
Number of extensions: 9301
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48205926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)