Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m18
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical p...    27   8.2  
Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U29097-3|AAM98030.1|  292|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical
           protein R10H10.1 protein.
          Length = 222

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +2

Query: 458 RTMFIQTQDTPNPNSLKFLPG 520
           R+M+IQ Q+TPNP SLKFLPG
Sbjct: 14  RSMYIQVQETPNPLSLKFLPG 34


>Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 383 LSAFVKLMRIVHGCTVYYFLKSVVAFVA*FQLFK*FEVIKLLSATIQY*CYCFKVNW 213
           LS  VK +R+       YF   V+   A + L     V ++  + + Y C   K NW
Sbjct: 374 LSKHVKTLRLSSSVVENYFESEVITKKADYGLMHWLNVQEIAYSLVLYQCDFHKTNW 430


>Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 383 LSAFVKLMRIVHGCTVYYFLKSVVAFVA*FQLFK*FEVIKLLSATIQY*CYCFKVNW 213
           LS  VK +R+       YF   V+   A + L     V ++  + + Y C   K NW
Sbjct: 374 LSKHVKTLRLSSSVVENYFESEVITKKADYGLMHWLNVQEIAYSLVLYQCDFHKTNW 430


>U29097-3|AAM98030.1|  292|Caenorhabditis elegans Hypothetical
           protein F18C5.10 protein.
          Length = 292

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 440 LDSFVECQTLKYLIVXGTFLSAFVKLMRIVHGCTVYYF 327
           +DS    Q ++YLI+      A++ L  ++  C  ++F
Sbjct: 222 IDSIFPVQVIEYLIILCILTGAYIGLAYLIEWCIRHFF 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,002,394
Number of Sequences: 27780
Number of extensions: 169132
Number of successful extensions: 374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)