Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m15
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    31   0.12 
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    28   1.1  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   2.0  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   6.0  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   7.9  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   7.9  

>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +1

Query: 127 LKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKNPDVQIVTLKNLTPSPFI---KCY 297
           +KD +  F+V Y+  G + V   ++C   LPQI  KNPD Q     N   S F+   K  
Sbjct: 51  VKDPVDFFAV-YDGHGGDKVA--KWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAI 107

Query: 298 LDD 306
           LDD
Sbjct: 108 LDD 110


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 172 GQNNVGTKEFCFWYLPQIQYKNPDVQIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKED 351
           G ++ G KEF    L  +  ++ DV+          P I+ Y + GR+ +I     S   
Sbjct: 34  GGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGREKVICTRKMSASS 93

Query: 352 ILE 360
           I +
Sbjct: 94  IFQ 96


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 61  PFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNIT-GQNNVGTKEFCFWYLPQIQYKN 237
           PF+  RAP R+T +YL   K V KD      +A   T    +    +F    L Q  +++
Sbjct: 4   PFLTFRAPTRKTGDYL-VSKFVKKDNFSSLRLARAYTFSTRSTAVSQFSLLSLSQRSFQS 62


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 262 KNLTPSPFIKCYLDDGRKILIDVDNKSKE 348
           KN   +P I+C L+  ++ L+   N+SKE
Sbjct: 102 KNNDDAPTIRCALNCTQEFLLSFSNESKE 130


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 109 NAGKLVLKDKIKVFSVAYNI 168
           N G LV ++++K+ S+AY I
Sbjct: 252 NVGALVCENEVKMLSIAYEI 271


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 220 QIQYKNPDVQIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHT 375
           +I + NP+VQI+ LK LT +    C  + G   L+++ ++   D L  +L +
Sbjct: 57  RIDHSNPNVQIMALK-LTDT----CVKNGGSGFLLEIASREFMDNLVSILRS 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,215
Number of Sequences: 5004
Number of extensions: 49495
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)