Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5m14
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0746 - 19888479-19888622,19888739-19888867,19889061-198895... 31 0.25
01_07_0114 + 41161923-41163251 27 3.1
07_03_1429 + 26501055-26501639,26502252-26502385,26502499-26502880 27 4.1
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 27 4.1
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 26 7.2
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123... 26 7.2
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 26 7.2
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 26 7.2
12_01_0740 + 6646471-6649407 25 9.5
09_03_0063 - 11976529-11977491,11980540-11981307 25 9.5
>09_04_0746 -
19888479-19888622,19888739-19888867,19889061-19889548,
19889666-19889843,19889920-19889991,19890993-19891193
Length = 403
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 158 TNTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLP 51
TN FQS + S T PP PP D + + +SK LP
Sbjct: 41 TNPFQSAAFSSTTTGDPP-PPTMD-SPIKVSKIILP 74
>01_07_0114 + 41161923-41163251
Length = 442
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 71 SPPHSCLQPEGSAVLLL*RSYISRTGKYSSQIYPITTESLRDS 199
+PP CL P L+L S + TG+ + P+ +RDS
Sbjct: 3 NPPIKCLLPPAIVSLVLLISCMVATGEQQAPYKPLVVPLVRDS 45
>07_03_1429 + 26501055-26501639,26502252-26502385,26502499-26502880
Length = 366
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 119 KAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYFFS 12
+A PP+P E+ AV +L + ++W+ FS
Sbjct: 100 RALPPSPAMEEETAVRAQGVYLYDKKEAPNAWFAFS 135
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 170 PITTESLRDSKRRSEY 217
P++TESL+ SKRRS +
Sbjct: 455 PLSTESLKSSKRRSSF 470
>12_01_0089 -
707260-707317,707626-708050,708663-709621,710223-710408,
710502-710604,710701-710883,710932-711012,711072-711164,
711650-711832,713751-713966
Length = 828
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 128 SVTKAAPPNPPAEDRNAVAIS 66
+V PNPP+EDR A I+
Sbjct: 39 AVVARIQPNPPSEDRRAAVIA 59
>05_01_0177 +
1231679-1231753,1232259-1232546,1232608-1232685,
1233458-1233673,1233862-1233981,1234079-1234804
Length = 500
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -3
Query: 146 QSVKYRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYFFS 12
++V + T + PP E++ + I F NSSW F S
Sbjct: 88 EAVPVPAQTSSLPPGVSREEQATIKIQTAFRGYLLSENSSWLFIS 132
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 142 DWKVFVANIPYYNGKFKGL 198
DW V +PY GK KGL
Sbjct: 668 DWGVQQDTVPYIQGKIKGL 686
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 170 GIFATNTFQSVKYRSVTKAAPPNPPAEDRNAVAIS 66
G+ T T Q ++ + + A P PP+E A A S
Sbjct: 890 GVSVTRTGQGMRRSASSPALAPPPPSESGTAAATS 924
>12_01_0740 + 6646471-6649407
Length = 978
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 77 PHSCLQPEGSAVLLL*RSYISRTGKYSS 160
P CL + SA+L L RS+ + G YS+
Sbjct: 4 PVPCLPDQASALLQLKRSFNTTVGDYSA 31
>09_03_0063 - 11976529-11977491,11980540-11981307
Length = 576
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -1
Query: 82 MRWRFPNVS--CPHEPFLIALGTFLVG 8
++W NVS PH P+L+A+ L+G
Sbjct: 388 IKWALNNVSFTLPHTPYLVAMKRGLLG 414
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,839,167
Number of Sequences: 37544
Number of extensions: 133695
Number of successful extensions: 440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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