Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m14
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    30   0.39 
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    30   0.39 
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      30   0.39 
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    30   0.39 
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    30   0.39 
U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.        28   1.6  
U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3...    28   1.6  
U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical pr...    27   2.8  
U13645-8|AAM15544.1|  565|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z68336-6|CAE17801.1|  204|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    26   6.4  
AF251126-1|AAF71273.1|  487|Caenorhabditis elegans UDP-GlcNAc:a-...    26   6.4  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z81493-9|CAB04045.1|  347|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z73910-1|CAA98134.2|  523|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical ...    25   8.4  

>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 181 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 44
           R N +YLR++L +  +  +L    RR++   +    +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 181 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 44
           R N +YLR++L +  +  +L    RR++   +    +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 181 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 44
           R N +YLR++L +  +  +L    RR++   +    +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 181 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 44
           R N +YLR++L +  +  +L    RR++   +    +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 181 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 44
           R N +YLR++L +  +  +L    RR++   +    +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210


>U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 130 GALQKQHRRTLRLKTGMR-WRFPNVSCPHE 44
           G LQ  H++ L      R WR+P++S PHE
Sbjct: 74  GRLQVSHKKGLPHVIYCRVWRWPDISSPHE 103


>U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3
           protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 130 GALQKQHRRTLRLKTGMR-WRFPNVSCPHE 44
           G LQ  H++ L      R WR+P++S PHE
Sbjct: 74  GRLQVSHKKGLPHVIYCRVWRWPDISSPHE 103


>U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical
           protein C05D10.4b protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 146 QSVKYRSVTKAAPPNPPAEDRN 81
           QS+  R+V   APPNPP  +++
Sbjct: 162 QSINSRAVPPPAPPNPPKMEKH 183


>U13645-8|AAM15544.1|  565|Caenorhabditis elegans Hypothetical
           protein C05D10.4a protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 146 QSVKYRSVTKAAPPNPPAEDRN 81
           QS+  R+V   APPNPP  +++
Sbjct: 130 QSINSRAVPPPAPPNPPKMEKH 151


>Z68336-6|CAE17801.1|  204|Caenorhabditis elegans Hypothetical
           protein F22B3.9 protein.
          Length = 204

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 149 FQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWY 21
           + ++KY S     PPN P+  R+  A+ +  +P+  I    ++
Sbjct: 129 WSTMKYSSDDNETPPNEPSPRRSKSALIQTLVPSDFILKKLYF 171


>Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical
           protein C03E10.4 protein.
          Length = 487

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 256 CVNCELVTM*LYLKSFKK 309
           C NCE++++  YLKS  K
Sbjct: 291 CENCEIISLGFYLKSTNK 308


>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 155 NTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLP 51
           N F+  +Y+      PP PP   +N+ ++++ + P
Sbjct: 370 NYFEQARYQRPPVQMPPPPPPPQQNSPSVNENYHP 404


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 155 NTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLP 51
           N F+  +Y+      PP PP   +N+ ++++ + P
Sbjct: 370 NYFEQARYQRPPVQMPPPPPPPQQNSPSVNENYHP 404


>AF251126-1|AAF71273.1|  487|Caenorhabditis elegans
           UDP-GlcNAc:a-6-D-mannoside
           b1,2-N-acetylglucosaminyltransferase II protein.
          Length = 487

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 256 CVNCELVTM*LYLKSFKK 309
           C NCE++++  YLKS  K
Sbjct: 291 CENCEIISLGFYLKSTNK 308


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 143 SVKYRSVTKAAPPNPPA 93
           SV Y++V   APP PPA
Sbjct: 383 SVTYQNVAPTAPPAPPA 399


>Z81493-9|CAB04045.1|  347|Caenorhabditis elegans Hypothetical
           protein F01D5.10 protein.
          Length = 347

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 41  WFVWARNIWKSPPHSCLQP 97
           WF +++  WK+PP + LQP
Sbjct: 64  WFAYSQ--WKNPPQAQLQP 80


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 143 SVKYRSVTKAAPPNPPA 93
           SV Y++V   APP PPA
Sbjct: 383 SVTYQNVAPTAPPAPPA 399


>Z73910-1|CAA98134.2|  523|Caenorhabditis elegans Hypothetical
           protein M117.1 protein.
          Length = 523

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -2

Query: 177 VIGYICDEYFPVREI 133
           V+GY+C ++ P++E+
Sbjct: 201 VVGYVCSKWSPIKEV 215


>AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical
           protein Y39A1A.5 protein.
          Length = 545

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 104 NPPAEDRNAVAISKCFLPTRTIFNSSWYFFS 12
           NPP    N   IS+  +P R +   + YFF+
Sbjct: 342 NPPLIQSNVKFISRFAIPARLMSGEAAYFFT 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,977,962
Number of Sequences: 27780
Number of extensions: 120036
Number of successful extensions: 269
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)