Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5m10
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          26   5.5  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    25   7.2  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   9.5  

>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 9   DCSLRGTRVSENIEPTLRESIYDLSNIINFQIDN 110
           +CSL+G      I PTL    Y+LSNI     DN
Sbjct: 155 ECSLQGFMY---IPPTLFIDRYELSNIAEMHADN 185


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 408 DIYKVKIRNVFKATDKAVAALRSGRLFTPPHES 506
           D+ K +++ + + TDK    + SGR F    E+
Sbjct: 236 DVAKTRLQTMIRTTDKVSDDINSGRYFFAKDEN 268


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = +2

Query: 380 ENISRERRLRHLQSENSK 433
           +N+S E+R+ +L++EN+K
Sbjct: 107 DNVSLEKRVEYLETENTK 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,779
Number of Sequences: 5004
Number of extensions: 56096
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)