Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5m10
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805... 30 1.4
05_07_0240 + 28606345-28607316 29 3.2
07_03_0576 + 19638725-19638779,19638988-19639144,19639871-196401... 28 5.6
06_01_0951 - 7329416-7329778,7329862-7330131,7330285-7330695,733... 28 5.6
10_08_0982 - 22025279-22027277,22030256-22030488,22031205-220313... 28 7.5
10_02_0110 - 5371536-5372882 27 9.9
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 27 9.9
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039... 27 9.9
>08_02_0094 +
12277756-12278574,12280314-12280418,12280487-12280543,
12280969-12281041,12281525-12281703,12281788-12281961,
12282041-12282326,12282433-12282509,12282599-12282668,
12282751-12282822,12282920-12283155,12283240-12283374,
12283466-12283761,12284237-12284408,12284510-12284608,
12284704-12284835,12284950-12285050,12285426-12285615,
12285723-12285761
Length = 1103
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 33 VSENIEPTLRESIYDLSNIINFQIDNFLQRFFQTNNIKSCVF 158
V E+IE LR YD S I FL++FF++NN+ C+F
Sbjct: 370 VFEDIE-NLRN--YDWSKFIYDWTMTFLKKFFKSNNLGGCLF 408
>05_07_0240 + 28606345-28607316
Length = 323
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 456 AVAALRSGRLFTPPHESLCGVSLQPRETYVITGQVLHLEAHI 581
A A+ RS R PPH S S +PR T + G+ L + +
Sbjct: 33 AAASSRSSRSKKPPHSSDPNQSKKPRLTLTVPGRPLSADGEV 74
>07_03_0576 +
19638725-19638779,19638988-19639144,19639871-19640113,
19640267-19640801,19640897-19641054,19641194-19641626
Length = 526
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 492 PPHESLCGVSLQPRETYVITGQVLHLEAHIYLCGYIAK 605
PPH+ + + + P ETY++ G L + + L +AK
Sbjct: 419 PPHDLILTLDIAPHETYILYGNDLVVHWVLRLVDALAK 456
>06_01_0951 -
7329416-7329778,7329862-7330131,7330285-7330695,
7331149-7331300,7332400-7332469,7333941-7334018
Length = 447
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 369 GRVQKTFRGREDYDIYKVKIRNVFKATDKAVAAL 470
GR+ F GR+D D+YK + +++ KA+ +L
Sbjct: 291 GRMVLIFLGRKDEDVYKGDLNHMYGFVTKALESL 324
>10_08_0982 -
22025279-22027277,22030256-22030488,22031205-22031344,
22032783-22032957
Length = 848
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Frame = +2
Query: 374 GSE-NISRERRLRHLQSENSKR-FQSNRQ 454
G+E N++ R L+HL+SEN +R F+S+ Q
Sbjct: 812 GNESNLALHRALKHLKSENKRRLFESSSQ 840
>10_02_0110 - 5371536-5372882
Length = 448
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 492 PPHESLCGVSLQPRETYVITGQVLHLEAHIYLCGYIA 602
PPH+ L G+S + ++++T + A + C ++A
Sbjct: 312 PPHDHLLGISPDGKLSFIVTSRYFDGSAGVSSCYHLA 348
>05_04_0124 +
18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = -3
Query: 459 QPCLLL*KRFEFSLCKCRSLLSREMFSEPCRRLQNHFCNNEFAGVPMRTCRHWR 298
Q C ++ F + S+ PCR L H C NE V +H R
Sbjct: 540 QRCPIIRSLFSLHKNRMDSMKDVRFMVSPCRVLGLHICGNEIFSVEPAYMKHLR 593
>04_04_1143 +
31202901-31203034,31203312-31203345,31203913-31203985,
31204090-31204187,31204356-31204448,31205081-31205154,
31205680-31205768,31205859-31205935,31206016-31206090,
31206438-31206485,31206571-31206654,31206734-31206821,
31206896-31206974,31207072-31207162,31207724-31207802,
31208219-31208334,31208430-31208488,31210292-31210342,
31211418-31211444,31211725-31211809,31211952-31212024,
31212154-31212251,31212385-31212477,31212972-31213045,
31213258-31213296,31213410-31213498,31213583-31213707,
31213750-31213824,31214225-31214272,31214359-31214442,
31214574-31214661,31214762-31214840,31214930-31215020,
31215113-31215191,31215485-31215600,31215910-31215987
Length = 960
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 45 IEPTLRESIYDLSNIINFQIDNFLQRFFQTNNIKSCVFVVVRVRLYRSRNDP 200
+ P + + ++ SN I F F F + + SC + +++YR RN P
Sbjct: 307 VSPEISDVVHSQSNKIGF----FAHGFTYSGHPVSCAVALEALKIYRERNIP 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,371,348
Number of Sequences: 37544
Number of extensions: 383575
Number of successful extensions: 1013
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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